| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,130,210 | G→A | N218N (AAC→AAT) | flgA ← | flagellar basal body P‑ring formation protein FlgA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,130,210 | 0 | G | A | 95.0% | 42.8 / NA | 20 | N218N (AAC→AAT) | flgA | flagellar basal body P‑ring formation protein FlgA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (12/7); minor base C (1/0); total (13/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 | |||||||||||
CCGGGTTGCATCAGTTTTGCTTGCGCGTCGCTTAACGTCACACTGGTGCTGGTGGAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTAC‑CGGCGCGTCAGTGGTTTCGCGCGG‑TTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGGTTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTACCCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAA > NC_000913/1129968‑1130454 | ccGGGTTGCATCAGTTTTGCTTGCGCGTCGCTTAACGTCACACTGGTGCTGGTGGAGGCGGTTGTTTTTGCCGCCCGGCAGTTTGTTAC‑CGGCGGGGCAGGGGGTTCGCGCGGGTTGA‑CGGCGCTTACAGGCTTCAGAGGCGGAGTGCGAACAATACTCATGGTTTTTTTCTCATTGTGGGGGCTTTTTTCCTGTGTTGCTTATTTTTCGGCCAGGGACGGGTAATCTTTAACAGCTTACAGATTTTTaa > 1:131016/1‑250 (MQ=255) cgtgTCGCTTAACGTCACACTGGGGCTGTTGGTGTCTGTTGTTTTTGCCGCCCGGCTTTTCGT‑ACACGGCGCGTCAGTGGTTTCGCTGGG‑GTGAACGGTGCGTACAGGCTTCAGAGGCCAATTGCGATCAATACTCATGGTTTATTCCTCAGTAAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAATGGACGGGTAATCTTTAACAGCGGACATATTTATAAGAATATTCTCATCTGCATcaaca < 2:284571/247‑1 (MQ=255) ggtgctggtgGAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTAC‑CGGCGCGTCAGTGGTTTCGCGCGG‑TTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTcc < 1:303574/249‑1 (MQ=255) ggAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTAC‑CGGCGCGTCAGTGGTTTCGCGCGG‑TTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATg < 1:364264/250‑1 (MQ=255) gTTCGTTAC‑CGGCGCGTCAGTGGTTTCGCGCGG‑TTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTg > 1:13081/1‑251 (MQ=255) cGTTAC‑CGGCGCGTCAGTGGTTTCGCGCGG‑TTGAACGGTGCTTACAGGATTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCACGGGACGGGTAATCTTTAACAGCTTACAGATTTCTAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTACCGATACAATTCACACCCGCGCATTCTGTGCGACGGCTGCAt > 2:340147/1‑251 (MQ=255) cc‑cGGCGCGTCAGTGGTTTCGCGCGG‑TTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGtt < 1:262775/250‑1 (MQ=255) aC‑CGGCGCGTCAGTGGTTTCGCGCGG‑TTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGTCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATTCCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGt < 1:328847/250‑1 (MQ=255) g‑TTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCACGATACCATGCGCACCCGCGCATTATGTGCGACGGCTGCATTGTTCAGCGCCTTACCTTCTGCGTTGgcg > 2:121296/1‑251 (MQ=255) gcaCGGTGCTTACAGGCTTCAGAGGAGAAGTGAGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGAAACCATGCGCACCCGCGCCTTATGTGCGACGGCAGCATTGTTCAGCGACTGACCTTCTGCGTTGGCGCt > 2:261079/3‑250 (MQ=255) aCAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCAc < 1:24980/250‑1 (MQ=255) aCTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGCTTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGCCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCg > 2:41793/1‑251 (MQ=255) aTTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGCATATTCACATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATACGCACCCTCGCATTCTGTGCGACGGCTGCATTGTTCATCGCCTGACCTTCTGCGTTAGCGCTAAACCCATCACCGCTGGCGATCACATTGAAGCGTTGTCCCGCTTTTACCCGc > 1:170138/1‑251 (MQ=255) gAGGGCGATTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAAAAGCTTACCGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACAGCTGCATTGATCAGCGCCTGACCTTCTGCGTTCGCGCTAAACCCATCACCGCTAGCGATCACATTAATGCGATGTCCCGATTTTACCCTCCATGCTTGGc > 2:284325/1‑251 (MQ=255) gtTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTACCCGCCATGCCTGGCGAAACTGGGTTAACTGGAt > 1:154059/1‑251 (MQ=255) gggTAATCTTTAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGCCTACCTGTCACGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGAACTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTACCCGCCATGCCTGGCGCAACTGGGATAACTGGATAGGTTGATCGGGTGAAAGATagcg > 1:335977/1‑251 (MQ=255) tttAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTACCCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTa > 1:17872/1‑250 (MQ=255) tAACAGCTTACAGATTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTACCCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTAATg > 2:82200/1‑251 (MQ=255) gCTTACCGATTTCTAAGAATACTCCCATCTGCATCAACAACGCCGCTGACTACCTGAACGGATACCATCCGCACACGCGCATTCTGTGCGACGGCCACATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCCGCCGATCACATTGAACCTTTGTCCCGCTTTTACCCGCCATCCCTGGCGATCCTGGGTTAACTGGCTAGGTTGATTGGTTTATAGATCGCGCAGGCAAATGGCATc > 2:177472/1‑251 (MQ=255) tACAGATTTATAATAATATCCCCACCTGAATCAACACCGCCGCTGCCTCCCTGTCCCGATACCAGGCGCCCCCGCGCATTCTGGGCGACGGCTGCTTTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCCCCGCGGGCGATCACATTGACGCGTTTTCCCGCTTTTACCCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTAATGGCATcaa < 1:261079/250‑1 (MQ=255) | CCGGGTTGCATCAGTTTTGCTTGCGCGTCGCTTAACGTCACACTGGTGCTGGTGGAGGCGGTTGTTTTTGCCGCCCGGCTGTTCGTTAC‑CGGCGCGTCAGTGGTTTCGCGCGG‑TTGAACGGTGCTTACAGGCTTCAGAGGCGAAGTGCGATCAATACTCATGGTTTATTCCTCATTGAGGGCGCTTTTATCATGTGTTGCTTATTTATCGGCAAGGGACGGGTAATCTTTAACAGCTTACAGGTTTATAAGAATATTCCCATCTGCATCAACAACGCCGCTGACTACCTGTCCCGATACCATGCGCACCCGCGCATTCTGTGCGACGGCTGCATTGTTCAGCGCCTGACCTTCTGCGTTGGCGCTAAACCCATCACCGCTGGCGATCACATTGACGCGTTGTCCCGCTTTTACCCGCCATGCCTGGCGAAACTGGGTTAACTGGATAGGTTGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAA > NC_000913/1129968‑1130454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |