| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,126,316 | G→A | E54K (GAA→AAA) | yceH → | DUF480 domain‑containing protein YceH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,126,316 | 0 | G | A | 86.2% | 56.0 / 1.4 | 29 | E54K (GAA→AAA) | yceH | DUF480 domain‑containing protein YceH |
| Reads supporting (aligned to +/- strand): ref base G (2/2); new base A (13/12); total (15/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
AATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCGAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAA > NC_000913/1126088‑1126552 | aaTGGCGCGATCACGTACTGACTGCAATAACTACTCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCGTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAAGACCCGCACTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGATCCGTGAACTGGTCATGAATCTGAGTGAATTCAAAGTGCAGGATCAGCTGGATaa < 2:268490/251‑1 (MQ=255) gTACTGACGGCATTAACTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGGCATGAATCTGAGTGAATCCAACGTGCAGGAACAGCTGGAGAATCTGGTCAAACGTc > 2:188782/1‑251 (MQ=255) aaCTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGACCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACAACGCAGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAGACGAACCGTGAAACGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGACAAACGTCATTATCTACGcac > 1:33123/1‑250 (MQ=255) cTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGCCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGt > 1:354010/1‑251 (MQ=255) tACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTACAGGAACAGCTGAATAATCTGGTCAAAAGTCATTATCTACGCACAGtt > 1:5476/1‑250 (MQ=255) aGACTGGACGCCCGTCCGCTAAGGAGAGTCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGATCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACCGTGAGCGGt < 2:260475/251‑1 (MQ=255) ggACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTg < 1:227749/250‑1 (MQ=255) aCGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAACCGACATTATCTACGCACAGTGAGCGGTTTTGGt > 2:53088/1‑250 (MQ=255) ccgcccGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCGAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCg < 1:220913/247‑1 (MQ=255) atatCAACTTACGGCCCTTGAAGCTCGCTTGATGGGTTGCTTGCTGGAAAAGCATGTCATCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGTCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTTAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGttttt < 2:133073/251‑1 (MQ=255) aCTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAAtt > 1:36450/1‑251 (MQ=255) cggCCCCTGAAGCTCGCGTTATTTGTTGCTTGCTGGAAAAGCAGTTGACCACTACGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGTATAATCTGGTCAAACGTCATGATCTACGCACTGTGAGCGGTTTTGGTAAGCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGaa < 2:338073/249‑1 (MQ=255) acTTGCAGCTCGCGTGATTGGATGCTTGCTGGAAAAGCAGGTGACCACACCGGCGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAACCGTCATTATCTACGCACAGTGAGCGGTTTTGATAATCGGGTCACCAAATATGAGCAACATTTTTGAAATTCAGAATTTg > 2:15074/2‑251 (MQ=255) tGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTgg < 1:114980/249‑1 (MQ=255) gctGGAAAAGCAGGTGACCTCGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACTCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGaa < 1:343010/250‑1 (MQ=255) tGGAAAAGCAGGAGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGGGTAGTCACGGCCTGTCATCAGAAACCGACCCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAAAAGCTGGATAATCTGGTAAAAAGACATTATCTACGAAAAGTGAGCGGTTTTGGTTATCGGGTCACCAAATATGAGCAAAGTTTTTGTAATTCAGAATTTGGCGATCTAAAAcagcgagaagcggacgtg > 1:358552/1‑234 (MQ=255) aGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGACAACGAATCGTGAACCGGTCATGAATCTGAGTGTATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAAGATGAGCAACGTGTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATc < 2:141570/251‑1 (MQ=255) ggTGACCACGCCGGAGCAATACCCGCTCGCAGGCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGGGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGCACAGCTTGATAATCTTGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTGGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTTATTCAGAATGTGGCGATCTGAAACTGTGCGCAGCGGAAGTGGCGTTAATca < 2:147463/251‑1 (MQ=255) ccACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACg < 1:53088/251‑1 (MQ=255) caggcAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAAACGGTCATGAAGCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTTGTCAATCGACATTATCTACGCACAGTGAGCGGTTGTGGTAATCGGGTCAACAAATATGAGCAACGTTTGTGTAAGTCAGAATTTGGCGTTCTGAAATTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTTCGTGGTGCCCAGAc < 2:57174/246‑1 (MQ=255) gAACCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGTCGCGCGAATGTATg > 1:267155/1‑251 (MQ=255) aaCCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCCAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCCCCAAATATGGGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGATGCCCAGACGCCAGGTGAGCTGCGCAGCCGCGTCGCGCGAATGTATg > 1:81077/1‑250 (MQ=255) aCCGTGAACCGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGTCGCGCGAATGTATGa > 1:106990/1‑250 (MQ=255) ccGTGAACCGGTCATGAATCTGAGAGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGTCGCGCGAATGTATGAAt > 1:148025/1‑251 (MQ=255) tGAACCGGTCATGAATATGAGTGAATCCGAAGTGCAGGAACAGCTGGCTAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGCTCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGGGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTc > 2:21165/1‑250 (MQ=255) ccGGTCATGAATCTGAGTGAATCCAAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTATAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGTCGCGCGAATGTATGAATTCAGCgt > 1:348378/1‑250 (MQ=255) gAGTGAATCCAAAGTGCATGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCATCCGCGTCGCGCTAATGTATGAATTCAGCGATATGGCGGaa < 1:322253/247‑1 (MQ=255) tCCGAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAgg > 1:236986/1‑188 (MQ=255) tCCGAAGGTCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTTGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAgg < 2:236986/188‑1 (MQ=255) | AATGGCGCGATCACGTACTGACGGCATTAACTACCCCAGACTGGACGCCCGGCCGCTAAGGAGAATCTCATGAAATATCAACTTACTGCCCTTGAAGCTCGCGTGATTGGTTGCTTGCTGGAAAAGCAGGTGACCACGCCGGAGCAATACCCGCTCTCAGTCAATGGTGTAGTCACGGCCTGTAATCAGAAAACGAACCGTGAACCGGTCATGAATCTGAGTGAATCCGAAGTGCAGGAACAGCTGGATAATCTGGTCAAACGTCATTATCTACGCACAGTGAGCGGTTTTGGTAATCGGGTCACCAAATATGAGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAA > NC_000913/1126088‑1126552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |