| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,121,547 | G→A | intergenic (‑60/+14) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydroorotase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,121,547 | 0 | G | A | 94.4% | 44.5 / ‑3.8 | 18 | intergenic (‑60/+14) | dinI/pyrC | DNA damage‑inducible protein I/dihydroorotase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (10/7); total (11/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.26e-01 | |||||||||||
TCTTTTGTCGCGCCAATAACCGATAAATTATTCGCTGCGGCATAACGTACCGATACGTGGCCTTCATTATCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCGGGCCGTTTACAGAACAGAATGCTTCAAAGTGCTGCAAAGCATTCATTTCTTCAAAGACGGTAGCGTAACTGCCCAGCGCGGTTG > NC_000913/1121315‑1121790 | tcttTTGTCGCGCCAATAACCGATAAATTATTCGCTGCGGCATAACGTACCGATACGTGGCCTTCATTATCAGGAAACGCATACTGAATACGGCGGGAAAATTCTCCCGCCACGGCGTCAATAACCCCCGCCGGCCATTGGGAAGTTTTTGCTATTGTTTCTTCACTTTTCATAATATCCCCCCTTTTTATATACTTGTTTTTTTTTCAGGTTAAATAAACTCTTGTCAACAAGAAGCTActttttttttt > 1:285711/1‑241 (MQ=255) aTCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGAt < 1:43448/250‑1 (MQ=255) aTCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATg < 1:6421/251‑1 (MQ=255) aTCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATg < 1:297063/251‑1 (MQ=255) cttgAAAGTTCGCCAGTCAGGGCGTCAATAGCCCCAGCTGACAATGGCGACGTTTTCGCTATGGTGCCTTCAATTCGCATCATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAACTAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGCACCAGCGTACAGTTTCCCCGTCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGGTGCTCTTCAc > 2:108522/4‑251 (MQ=255) gTTCGCCAGCCAGGGCGTCAATAGCCCCAGCTGGCAATGGAGACGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTAcc > 1:112384/1‑249 (MQ=255) ttCGCCAGCCAGGGCGTCAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGt > 1:262929/1‑251 (MQ=255) taagaaagtgcattaaTAGCCCAAGCTGGCAATGGACAATATTTCGCTATGGGGACTTCAATTCGAATAATAGCCCCCTGATGAATACAATGGGTATTTATACCGGTAAAATAACCTAAAGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCGGCGTGTCATCAGTCATTGCGATGCTTTCAGCAACCTCTTGGTCTTCACGTACCAGtt > 2:280109/15‑248 (MQ=255) aGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGAc < 1:10824/250‑1 (MQ=255) aagatttCGATATGGTGACTTCAAATCGCATAATAGCCACCTATTGAATCTACTGGTTATTTATACAGGTAAAATAACCTACTGACAGCAAGAAGCTACGATTTTTATTATTTAACGGACCAGCGTACCTTTTCCCCGGCGAGGGTAGGCACAAACGTTTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACTGACCAGTTCGTTGAATG‑GTACGTAGACCGGCAACCCATAGaaatgagg > 2:182302/5‑245 (MQ=255) ggTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCGGGCCGTTTacaga > 1:18214/1‑250 (MQ=255) catattcacccacTGTTGAATAGACTGTTTATTTATACAGGTATAATAACCTAATGCCAAGTAGAAGCTACTATTTTTATTGTGTAACGGTTCAGCGTACCTTTTCCCCGTCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGAGGCTTTCAGCAACCTGTTGCTCTTCACGTTCCAACTCGATGAATGTGT‑CGTTGGCCGGCACCCCATAAAACTGCTGGCCGTTTACAGAACAGAATGTTTCAAAg < 2:4198/239‑1 (MQ=255) cccTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCGGGCCGTTTACAGAACAGAATGCTTCACAGTGCTGCaa > 1:250310/1‑249 (MQ=255) gAATATACTGGTTATTTATACAGGTATAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCGGGCCGTTTACAGAACAGAATGCTTCAAAGTGCTGCAAAGcattca < 2:262929/250‑1 (MQ=255) cAGGTAAAATAACCTAATGACAACAAGAAGCTACTATTGTTATTTGTTAACGGACCATCTTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGTTGCTTTCACCTACCTGTTACTCTTCACGTTCCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCTGGCCGTTTACAGAACCGAATTCTTCAAAGTGCTGCAAAGCATTCATTTCTTCAAAAACGGTAGCGt < 2:72954/251‑1 (MQ=255) tAAAATAACCTAATGACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCGGGCCGTTTACAGAACAGAATGCTTCAAAGTGCTGCAAAGCATTCATTTCTTCAAAAACGGTAGCGTAACt > 1:214918/1‑251 (MQ=255) tGACAACAGGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCGGGCCGTTTACAGAACAGAATGCTTCAAAGTGCTGCAAAGCATTCATTTCTTCAAAGACGGTAGCGTAACTGCCCAGCGCGGtt > 1:278524/1‑251 (MQ=255) gACAACAAGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCGGGCCGTTTACAGAACAGAATGCTTCAAAGTGCTGCAAAGCATTCATTTCTTCAAAAACGGTAGCGTAACTGCCCAGCGCGGTTg > 1:94840/1‑251 (MQ=255) | TCTTTTGTCGCGCCAATAACCGATAAATTATTCGCTGCGGCATAACGTACCGATACGTGGCCTTCATTATCAGGAAACGCATACTGAATACGGCGGGAAAGTTCGCCAGCCAGGGCGTCAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGT‑CGTTGACCGGCAACCCATAGAACTGCGGGCCGTTTACAGAACAGAATGCTTCAAAGTGCTGCAAAGCATTCATTTCTTCAAAGACGGTAGCGTAACTGCCCAGCGCGGTTG > NC_000913/1121315‑1121790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |