| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,078,268 | A→T | F205L (TTT→TTA) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,078,268 | 0 | A | T | 95.8% | 62.1 / NA | 25 | F205L (TTT→TTA) | putA | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (9/14); minor base G (0/1); total (10/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATATCGTAAGAGTAACGGAAACCTTTCTCTTCCAGCTTGCGGGCATTGGCTAACGCTTCCGCGATGGTTTCGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACAAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAGCGAAAACTCCTGCAATAACCCCTGGACCATACCTGCGC‑GACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTT > NC_000913/1078025‑1078507 | cATATCGTAAGAGTAACGGAAACCTTTCTCTTCCAGCTTGCGGGCATTGGCTAACGCTTCCGCGATGGTTTCGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTg < 1:249634/251‑1 (MQ=255) agagTAACGGAACCCTTTCTCTTCCAGCTTGCGGGCATAGGCTAACGCTTCCGCGATGGTTTCGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCCGTTTGCCCGTAAACAGCAACCCCCCGGTGGCGGCATTAACCAACCGTGGCGGGCTa > 2:28519/1‑250 (MQ=255) gTAACGCAAACCTTTCTCTTCCAGCTTGCGGGCATTGGCTAACGCTTCCGCGATGGCTTCGCCAGTGACGAACTGCTCACCCATCAGGAGCATCGCCATATCCACACCATTGCGGATCAGCGGTTAACCACTTTTACAGATAATGCGGTTCAGCGCGCGGGAGAGGCTGGCTTCGTTATGGGTTGAAACCCGTGTGCCAGCATACAGCACCCCCCAGGTGTCGGCATTAACTACCAGTGACGGGCTAcacc > 2:368239/1‑248 (MQ=255) aaCCTTTCTCTTCCAGCTTGCGGGCATTGGCTAACGCTTCCGCGATGGTTTCGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAAtgtgg > 1:380367/1‑250 (MQ=255) gCTTCCGCGATGGTTTCGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAAt < 1:315184/251‑1 (MQ=255) ccGCGATGGTTTCGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTGGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAAc < 1:242386/251‑1 (MQ=255) gATGGTGTCGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGt < 1:163370/251‑1 (MQ=255) atgtattCGCCAGTGACAAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCGGTTCCCCGCTTTTACCGATAATGCAGTTCAGCGAGCGGGAGAGGCTGGCTTCGGTATGGCTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGGCGGACTACGACCAATG‑G‑CGTACCGCCAGTTACCGTTGCTGATTTTGTCGCGAATCAACCCGTc > 2:75577/6‑251 (MQ=255) cGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCTGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGt < 1:213691/250‑1 (MQ=255) tCCACACCTTTGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACAt > 1:187146/1‑251 (MQ=255) acacCTTTGAGGAGCAGCGGTTCACCTCGTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCGGATTTTGTCGCGAATTAACGCGACGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAg < 2:21108/251‑1 (MQ=255) ggATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCAAGCCt > 1:165011/1‑251 (MQ=255) tCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATg < 1:28519/250‑1 (MQ=255) ccGCTTTTACCGATAATGCGGGTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTATCTAACAGTGACTGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCTGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGTCTTCCTGCGATGa < 1:123740/248‑1 (MQ=255) cGCTGTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTGCGTTATGGGTGTAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAATAGTGACGGGCTACGCCCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAGc < 1:357606/251‑1 (MQ=255) tCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAGCGAAAACTCCTGCAATAAcccc > 1:14446/1‑251 (MQ=255) gAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGAGGCGGCATTAACTAACAGTGACGGTCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGCTGACAGCGAACACTCCTGCAATAACCCCTGGACCATACCTGCGCAGAC‑ACTGGAATTTTTTTg > 2:174370/1‑251 (MQ=255) caggatGCCAGTACACAGCATGCCCCAGTTGGCAGCATTCACTACCATTGACGGGTTACGACTAATGTG‑TG‑TATTCCAGGTTCTGTTGCTTATTTCGTCGCGAATTAACGCTTCGCGGGTGGCTTTGTCTGGAAGACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTTCGATGACAGCGAAAACTCCTTCAATAACCCCCGGACCATACCTGCGC‑GACCACCGTCATTTTTTTGATTAc < 2:341081/246‑1 (MQ=255) aaaCAGCAGCCCCCAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCGTCCTGCGATGACAGCGAAACCTCCTGCAATAAACCCTGGACCATACCTGCGC‑GGCCACTGACATTTTTTTGATTACGCAATGTATCgg > 2:65418/1‑251 (MQ=255) aaaCAGCAGACCCCTGGGGGCTGCAGTAACTAATAGTGCTGGGCTTCGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTACCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGTCAGCGAAAACTCCTGCAATAACCCCTGGACCATACCTGCGC‑GACCACTGGCATTTTTTTGATTACGCAGTTTATCg < 2:287799/250‑1 (MQ=255) ccccAGGTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAGCGAAAACTCCTGCAATAACCCCTGGACCATACCTGCGC‑GACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGAt > 1:258271/1‑250 (MQ=255) ggTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAGCGAAAACTCCTGCAATAACCCCTGGACCATACCTGCGC‑GACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCa < 1:252684/251‑1 (MQ=255) ggTGGCGGAATTAACGAACAGTGACGGGCTACGAACAA‑GTGGTG‑ACTGCCAGTTCCCGGTGCGGATTTTGTCGCGAATGAACGCGTCGCGGGTGGCGTTGTCGGGAATACGCAACAACGATTCCGCCAGACACAACAGCGCCACGCCTTCCTGCGATGACAGCGAAAACTCCTGCAAGAACCCCTGGACCATACCTGCGC‑GACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCa < 1:16901/251‑1 (MQ=255) gTGGCGGCATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAGCGAAAACTCCTGCAATAACCCCTGGACCATACCTGCGC‑GACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAg < 1:75577/251‑1 (MQ=255) gcggcATTAACTAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAGCGAAAACTCCTGCAATAACCCCTGGACCATACCTGCGC‑GACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGttt < 1:368239/251‑1 (MQ=255) | CATATCGTAAGAGTAACGGAAACCTTTCTCTTCCAGCTTGCGGGCATTGGCTAACGCTTCCGCGATGGTTTCGCCAGTGACGAACTGCTCACCCATCAGGCGCATCGCCATATCCACACCTTTGCGGATCAGCGGTTCACCGCTTTTACCGATAATGCGGTTCAGCGAGCGGGAGAGGCTGGCTTCGTTATGGGTGGAAACCAGTTTGCCAGTAAACAGCAGCCCCCAGGTGGCGGCATTAACAAACAGTGACGGGCTACGACCAATGTG‑TG‑ACTGCCAGTTACCGTTGCTGATTTTGTCGCGAATTAACGCGTCGCGGGTGGCTTTGTCGGGAATACGCAACAACGCTTCCGCCAGACACATCAGCGCCACGCCTTCCTGCGATGACAGCGAAAACTCCTGCAATAACCCCTGGACCATACCTGCGC‑GACCACTGGCATTTTTTTGATTACGCAGTTTATCGGCCAGCTGATACGCCAGTTT > NC_000913/1078025‑1078507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |