| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 968,252 | G→A | K544K (AAG→AAA) | msbA → | ATP‑binding lipopolysaccharide transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 968,252 | 0 | G | A | 90.0% | 41.5 / ‑1.1 | 20 | K544K (AAG→AAA) | msbA | ATP‑binding lipopolysaccharide transport protein |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (4/14); total (5/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.80e-01 | |||||||||||
GGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAGGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACAAAATGCAGTTTGGCCAATGATCGAAAAAATCTGGTCTGGTGAATCCCCTTTGTGGCGGCTATTGCTGCCACTCTCCTGGTTGTATGGCCTGGTGAGTGGCGCGATCCGTCTTTGCTATAAACTAAAACTGAAGCG > NC_000913/968018‑968484 | ggATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTgg < 1:384205/251‑1 (MQ=255) ggTCTCGATACAGTGATTGGTGAAACCGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGGtcgtcgg > 1:271172/1‑250 (MQ=255) tGGTGAAAACGGCGTGCTGCTCTCTGGCGGTCAGCTTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATtgtg < 1:193026/250‑1 (MQ=255) gAAAACGGCGTGCTGCTCTTTGGCGGTCAGCGTTAGCGTATTGCTTTCGCTCGAGCCTTTTTGCGTGATTGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATGCGAACGTGCGATTCAGGCGGCACTTGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGGTTGTCTACCATTGAAAAAGCAGTCGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAAcg < 2:224108/251‑1 (MQ=255) gAAAACGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAAc < 1:26671/250‑1 (MQ=255) ggCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGACACTACCTCGGCTCTGGCTACCGAATCCGAACGTGCGATCCAGGCGGCACTGGATGAGATGCAGAAAAACCGTACCTCTATGTTGATTGACCACCGCTTGTCTACCATTGACAAAGCAGACGCAAGCGTGGTCGTCGAGGATGGTGTCATTGAGGGACGAGGTACGCATAAAGATTTGCt > 2:278850/1‑251 (MQ=255) aTTGCTATCGCGCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTa < 1:157253/251‑1 (MQ=255) tGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGgtc > 1:65480/1‑184 (MQ=255) tGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCGCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGgtc < 2:65480/184‑1 (MQ=255) cccgtgttgCGTGATATGCTGATGCTGATTCTGGACGAAGCTACCGCTGCTCAGGATACCGAATCCGAACGTGCGATTCAGGCGGAACTAGATGAGTTGCAGAAAAACCGGACCTCTCTGGTGATTGCCCGCCGCTTGTCGACCATTGAAAAAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTGGCTTGAGCACCGCGGCGTTTACGCGCAACTTCCCaa < 2:143456/247‑1 (MQ=255) gttgCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACAAAATg < 1:47155/250‑1 (MQ=255) gTGATAGACCGATTCTGATTCTGGACAAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTTCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGAGATTGCCCACCGCTTGTCTTCCATTGAAAAAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACTAAATGCAGttt < 2:256503/251‑1 (MQ=255) tgattctgGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAGGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAAcgc < 1:59905/173‑1 (MQ=255) tgattctgGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAGGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAAcgc > 2:59905/1‑173 (MQ=255) cGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTTGTGATTGCCCCCCGCTTGTCTACCATTGAAAAATCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCTGCGTTTACGCGCAACTTCACAAAATGCAGTTTGGCCAATGATCGAAAAAATCTGGTCTGGTGAAtaca < 2:271172/251‑4 (MQ=255) ctGGATACCGAATCCGAACGTGCGATTCAGGAGGCACTGGATGAGTTGCAGAAAAACCGTCCCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAACAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACAAAATGCAGTTTGGCCAATGATCGAACAACTCTGGTCTGGGGAATCCCCTTtg > 2:193040/1‑251 (MQ=255) tCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTTATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCTTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACAAAATGCAGTTTGGCCAATGATCGAAAAAATCTGGTCTGGTGAATCCCCTTTTTGGCGGCTATTGCTGCCTCTCTCCt < 1:75856/250‑1 (MQ=255) aCCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACAAAATGCAGTTTGGCCAATGATCGAAAAAATCTGGTCTGGTGAATCCCCTTTGTGGCGGCTATTGCTGCCACTCTCCTGGTTGTATGGCCTGGTGAGTGGCGCGATCCGTCt < 1:193040/250‑1 (MQ=255) ggTGATTGCCCACCGCTTGTCTACCATTGAAAAAGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACAAAATGCAGTTTGGCCAATGATCGAAAAAATCTGGTCTGGTGAATCCCCTTTGTGGCGGCTATTGCTGCCACTCTCCTGGTTGTATGGCCTGGTGAGTGGCGCGATCCGTCTTTGCtata < 1:278850/250‑1 (MQ=255) tGTCTACCATTGAAAAAGCAAACGAAATCGTGGTCGGCGAGGATGGTGTCTTTGTGGAACGCGGTACGCATAAAGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACAAAATGCAGTTTGGCCAATGATCGAAAAAATCTGGTCTGGTGAATCCCCTTTGTGGCGGCTATTGCTGCCACTCTCCTGGTTGTATGGCCTGGTGAGTGGCGCGATCCGTCTTTGCTATAAACTAAAACTGAAgcg < 1:68815/249‑1 (MQ=255) | GGATAACGGTCTCGATACAGTGATTGGTGAAAACGGCGTGCTGCTCTCTGGCGGTCAGCGTCAGCGTATTGCTATCGCTCGAGCCTTGTTGCGTGATAGCCCGATTCTGATTCTGGACGAAGCTACCTCGGCTCTGGATACCGAATCCGAACGTGCGATTCAGGCGGCACTGGATGAGTTGCAGAAAAACCGTACCTCTCTGGTGATTGCCCACCGCTTGTCTACCATTGAAAAGGCAGACGAAATCGTGGTCGTCGAGGATGGTGTCATTGTGGAACGCGGTACGCATAACGATTTGCTTGAGCACCGCGGCGTTTACGCGCAACTTCACAAAATGCAGTTTGGCCAATGATCGAAAAAATCTGGTCTGGTGAATCCCCTTTGTGGCGGCTATTGCTGCCACTCTCCTGGTTGTATGGCCTGGTGAGTGGCGCGATCCGTCTTTGCTATAAACTAAAACTGAAGCG > NC_000913/968018‑968484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |