| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 708,774 | G→A | A147A (GCG→GCA) | chiP → | chitooligosaccharide outer membrane channel |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 708,774 | 0 | G | A | 95.5% | 58.0 / ‑4.1 | 23 | A147A (GCG→GCA) | chiP | chitooligosaccharide outer membrane channel |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (13/8); total (14/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.49e-01 | |||||||||||
ACTCCACCTGGAATGCCAACCTCGATTTTCAGTCCGGTTATGCTGCTGATATGTTC‑GGCCTTGATATTGCTGCGTTTACGGCGATTGAAATGGCGGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCGAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATGTGGACCAACGAATACAAAGCGCCGTGGCATCTGGAAATGGATGAGTTTTATCAGAACGATAAAACCACCAAAGTTGATTATCTGCACTCCT > NC_000913/708539‑709003 | aCTCCACCTGGAATGCCAACCTCGATTTTCAGTCCGGTTATGCTGCTGATATGTTC‑GGCCTTGATATTGCTGCGTTTACGGCGATTGAAATGGCGGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACAtt > 1:13241/1‑251 (MQ=255) aTGCCAACCTCGATTTTCAGTCCGGTTATGCTGCTGATATGTTC‑GGCCTTGATATTGCTGCGTTTACGGCGATTGAAATGGCGGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGt < 2:137238/251‑1 (MQ=255) aCCTCCATTTTCAGTCCGGTTATGCTGGTGATATTTTCCGGCCTT‑ATATTGCTGCGTTTACGGCGAATTAAATTGCAGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCCTTTTCAAAAAGTAATAAAGACTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACg < 2:114639/251‑1 (MQ=255) atGTTC‑GGCCTTGATATTGCTGCGTTGACGGCGATTGAAATGGCGGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAgg < 1:11551/251‑1 (MQ=255) gCCTTGATATTGCTGCGTTTACGGCGATTGAAATGGCGGAAAACGGCGACATCTCCCCCCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACCAAAGCGGTATCAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGTATACATTCAGCCAACTGGTCAAACGCTTTTATCCCCGCACTGGAGCTTTATGCCAGAGACTTAt > 2:173435/1‑251 (MQ=255) aCGGCGATTGAAAGGGCGGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTAGCAGGGGGCGGAAGCCGGGGc < 1:381554/251‑1 (MQ=255) cGGCGATTGAAATGGCGGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCg < 1:320903/251‑1 (MQ=255) aTTGAAATGGCGGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGCCTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGAGGCGAAttt > 1:36367/1‑251 (MQ=255) gACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCGAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGc > 1:10826/1‑251 (MQ=255) cAGCTCCCACCCGAACGAAATCGCGTTTTAAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCAAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCgg > 1:305886/1‑219 (MQ=255) aGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATGTGGACCAACGAATACa > 1:65364/1‑250 (MQ=255) atccTAAGACGAAGACTGGTCCG‑GCGCCAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAACTTTAAATACGGTCCGGTTTGGGCAAGGGCAGGGTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGAAGCTTTATGCCAGGGACTTATCAGGGAGCGGACGCCGGGGCGAATTTTGATTACGGCGATGATGGTGCGTTGCGTTTCTCCGACATGTGGGCCACCGAATACAAAgagacgt > 2:276422/3‑245 (MQ=255) cTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATGTGGACCAACGAATACAAAGCGCCGTGGc > 1:203994/1‑251 (MQ=255) gACGAAGACTGGTCCGTGC‑ACAAAAGCGGTATAATTCTGTATAAAGCCGCGGCCAAATTTAAACACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTTCTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATGACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATGGGGACCAACGAATACAAAGCGCCGTGGCATCt < 2:250452/251‑1 (MQ=255) gACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATGTGGACCAACGAATACAAAGCGCCGTGGCATCt > 1:259396/1‑251 (MQ=255) cG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCg > 1:303983/1‑160 (MQ=255) cG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCg < 2:303983/160‑1 (MQ=255) tataAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATGTGGACCAACGAATACAAAGCGCCGTGGCATCTGGAAATGGATGAGTTTTATCAGAACGAt > 1:284170/1‑250 (MQ=255) cTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCTACTGGTCAAACGCTGTTAGCGCCGCACTCGATCTTTATGCCAGGTACTTACCAGGGGGCGGAAGCCGGGGCGCATTTTGATTAc < 2:166715/140‑1 (MQ=255) cTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTAc > 1:166715/1‑140 (MQ=255) aaTTTAAATACGGTCCGGTTTGGGCAAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATGTGGACCAACGAATACAAAGCGCCGGGGCATCTGGAAATGGATGAGTTTTATCAGAACGATCAAACCACCAAAGTTGATTATCTGCAc > 1:121372/1‑251 (MQ=255) aTTTAAATTCGGTCCGGTTTGGGCCAGTGCTGGTTTCTTTCATCCAACTTGTCAAACGTGGTTAGCGCCGCACTGGAGCGTTATGCCAGGTACTTATCAGGGTGCGGAAGCCGGGTCGAATTTTGATTACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATTTGGTCCAACGAATACAAAGCGCCGTGGCATCTTGAAAGGGATGAGTTTTATCATAACGATAAAGCCACCAAAGTTGATTATTTGCACt < 2:273064/251‑1 (MQ=255) tAAATACGGTCCGGTTGGGGCAAGGGCAGGATACATTCAGACAACTGGTCAAACGCTGTTAGCGACGCACTGGAGCTTTATGCCTGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGGTGATGCGTTGGGTTTCCCCTACATGTGGTCCAACGTATAAAAAGTGCCGGGGAATCTGGAAAGGGATGCGGTTTATCAGCACGATAAAACCACAAACGTTGATTAGTTGCACTCCt > 2:342671/1‑251 (MQ=255) | ACTCCACCTGGAATGCCAACCTCGATTTTCAGTCCGGTTATGCTGCTGATATGTTC‑GGCCTTGATATTGCTGCGTTTACGGCGATTGAAATGGCGGAAAACGGCGACAGCTCCCACCCGAACGAAATCGCGTTTTCAAAAAGTAATAAAGCCTATGACGAAGACTGGTCCG‑GCGACAAAAGCGGTATAAGCCTGTATAAAGCTGCGGCCAAATTTAAATACGGTCCGGTTTGGGCGAGGGCAGGTTACATTCAGCCAACTGGTCAAACGCTGTTAGCGCCGCACTGGAGCTTTATGCCAGGTACTTATCAGGGGGCGGAAGCCGGGGCGAATTTTGATTACGGCGATGCTGGTGCGTTGAGTTTCTCCTACATGTGGACCAACGAATACAAAGCGCCGTGGCATCTGGAAATGGATGAGTTTTATCAGAACGATAAAACCACCAAAGTTGATTATCTGCACTCCT > NC_000913/708539‑709003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |