| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 696,470 | C→T | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 696,470 | 0 | C | T | 96.0% | 65.0 / NA | 25 | noncoding (35/75 nt) | glnX | tRNA‑Gln |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (8/16); minor base G (0/1); total (8/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTGCTGGCGTGTTGAAACGTCAGGCGCTGAAATATGCGTTAGGGTTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGAC‑GCGGCAGCGTCGCATCCGACATTGAAGGATAAG‑ACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTG > NC_000913/696226‑696710 | ggTGCGGGCGTGTTTAAACTTCAGGCGATGAAATATGCGTTAGGGTTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGGAGGTCGGATAAGAC‑GCGGCAGCGGCGCATCCGACATTGAAGGATAAG‑ACGTGTCAACATCGCATTCTACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATc < 2:265694/250‑1 (MQ=255) cTGAAATATGCGTTAGGGTTGTAGCCTTACAACCTTGCCGGATGAGTGCCAACCGTAGGTCGGATAAGAC‑GCGGCAGAGTCGCATCCGACATTGAAGGATAAG‑ACGTGTACACATCGCATTCGACATTGATTGAACGCAGAAAAGCAAAAAGCTAGCCGAAGCGAGCTTTTTTACTGTGGCTGGGGAACGAGGATACGAACCTCGGAATGCAGGAGTTGGAGTACGGTGCCTTACCGCTTGGCGATCcccc > 2:366012/1‑251 (MQ=255) ttctacaTTGCCGGGTGGGTGCCACCCGAAGGTCGGATTAGACTGCG‑TAGGGCTGCATCTGTCAATGAAGGATAAGGAC‑TGTAAACATCGCATGCGCCATTGAATGAACGCAGAAAAGCAAGAAGCTCGCCGAAGCGAGCTTGTTGAATGTGGCTGGGGTACGAGTATTCGGATCTTTGAATGCCGGAATTGGAATCCGGTGCCTTGCCGCTGGGCGATACCCCAACTGGGTGCACTTACAAGGTGAGCg < 2:104385/246‑1 (MQ=255) caacaTGGCCGGATGCTTGCCAACCGTAGGTCGGATAAGAC‑TCTGCAGCGTCGCATCCGACATTGAAGGATAAT‑ACGTGTCAACATCGCAGTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGTGTACGAGGATTCGAACCTCTGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGTTTGCACTGACAAGGTAAGCGTCt < 2:51377/251‑1 (MQ=38) aTTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGAC‑GCGGCAGCGTCGCATCCGACATTGAAGGATAAG‑ACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGaa < 1:251940/251‑1 (MQ=255) gCGTGCCAACCGTAGGTCGGATAAGAC‑GCGGCAGCGTCGCATCCGACATTGAAGGATAAG‑ACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCt < 1:279461/251‑1 (MQ=255) cGTGCCAACCGTAGGTCGGATAAGAC‑GCGGCAGCGTCGCATCCGACATTGAAGGATAAG‑ACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTg < 1:305561/251‑1 (MQ=255) cgtacgtcggccaaGAC‑GCGGCAGCCACGCACGCGAAACTGAAGAACAAG‑ACGTGTCAACCTCATAGTCGTCATTGAATGATCGCAGAAAAGCAAAAAGCGCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAACGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTTTTGAATAAATTTGCTGGGGTACGAg < 1:34535/239‑1 (MQ=21) ataC‑GCGGCAGCGTCGCATCCGACAGTGAAGGATAAG‑ACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCTAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCTTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCg < 1:217728/249‑1 (MQ=255) gCATCCGACATTGAAGGATAAG‑ACGTTGCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTa < 2:202598/219‑1 (MQ=255) gCATCCGACATTGAAGGATAAG‑ACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTa > 1:202598/1‑219 (MQ=255) aG‑ACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGAACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGCGCCTTACCGCTTGGCGATACCCCAACAGGGTGCAATTACAAGGTAAGCGGCTTGAATAAATTGGCTGGAGCACGAGGATTCGAAGCACGGAGAGGCTGAATCAGAATCCGGTGACTTACCggtt > 1:62264/1‑248 (MQ=255) gtgtCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAAt > 1:95533/1‑216 (MQ=255) gtgtCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTGTAATGTGGCTGGGGGACGAGGATTCGAACCACGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAAt < 2:95533/216‑1 (MQ=255) gCATTCGACATTGAATGAACGCAGAAAAGCAAAAATCTCGCCGAAGCGAGCGTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCcaac < 1:211382/250‑1 (MQ=255) cggcATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAAtt < 1:61970/247‑1 (MQ=255) gACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGAGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACATCGGAATGCCGGAATTAGAATCCGGTGCCTTACAGCTTGGCGATACCCCAACTGGGGGCCCTTACAAGGTAAGCGCCTTGAATCAATTGGCTGGGGCACGAGGATTCGACCCTCGGAATGCCGGTATCAGAATCAGGTGCCTTACAGCTTggagctacaccctcaacttgg > 1:149104/1‑232 (MQ=255) aaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTg < 1:211069/251‑1 (MQ=255) aaaGCTCGCCGAAGCGAGCTTTTTTAATGGGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCTATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGAt < 1:221329/251‑1 (MQ=255) ccGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTATTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGGTTTGCATTTGCCGAACATATTCGATACATTc > 1:358153/1‑249 (MQ=255) gAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCcaaca < 1:185332/209‑1 (MQ=255) cTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGCTACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTAAGAATTtggtgg > 1:240075/1‑251 (MQ=255) tttAATGTGGCTGGGATACGAGGATTCAAACCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACATCTGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGCTTTGAATTTGCCGAACATATTCGATACATTCAGACTTTGGTGGCTac > 1:303606/1‑251 (MQ=38) aCCTCGGAATGCCGGAATTAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCcatcat < 1:72622/251‑1 (MQ=255) aTGCTGGAATGAGAATCCGGTGCCTTACAGCGTGGAGATACTCCAACTGGGTGCACTTACAAGGTAATCATCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCTATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATGCGAACCTGTGACCCCATCATTATGAGTg < 1:3417/251‑1 (MQ=38) | CGTGCTGGCGTGTTGAAACGTCAGGCGCTGAAATATGCGTTAGGGTTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGAC‑GCGGCAGCGTCGCATCCGACATTGAAGGATAAG‑ACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACTGGGTGCACTTACAAGGTAAGCGTCTTGAATAAATTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGGAATCAGAATCCGGTGCCTTACCGCTTGGCGATACCCCAACAAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATTTGGTGGCTACGACGGGATTCGAACCTGTGACCCCATCATTATGAGTG > NC_000913/696226‑696710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |