| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 47,099 | G→A | Q431Q (CAG→CAA) | yaaU → | putative transporter YaaU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 47,099 | 0 | G | A | 81.8% | 41.6 / 2.0 | 23 | Q431Q (CAG→CAA) | yaaU | putative transporter YaaU |
| Reads supporting (aligned to +/- strand): ref base G (3/1); new base A (8/10); total (12/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.64e-01 | |||||||||||
CCTAATGAACTCTTCCCGACAGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGTCGTATTGGCACCATTGTTTCGACCTGGGCACTACCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAGGACGCTGGAAGGC > NC_000913/46881‑47332 | ccTAATGAACCCTTACCGACAGATATCCGCGCCTATGCCGTGGCCGTGATTATGTACTTAAGTCGTATTGGCACCATTGTTTCGACCTGGGCACTACCGATCTTTATCAATAATTCCGGTAACAGTAACACGATGCTAATGGGCGCGGGTATCTAGCTGTTTGGCTTGTTGATTTCCGTCGCATTTGCCACGGAGACTCTGGGGATGTCCAAGGCGCCGAC‑CAGCAATATGATAATCCGCGGGccaagca > 2:164970/1‑244 (MQ=255) tGAACTCTTCCCGACAGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGCCGTATTGGCACCATTGTTTCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGCCTCGAGGGGTGTCACTGGCGCAAAC‑CAGCAATATACCGATCCGCGGGCAGAGAATggggg > 2:145615/1‑250 (MQ=255) attCCCGACAGATATCCGCGCCTCTGCCTTGGGCGTGAATATGTCCTTAAGCCTTATTGGCCCCATTGTTTCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAAGGGGGGCGCGTATCTCGCTGTTTGGGTTGTTGATTTCCGGAGCGTTTGCCCCTGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAAt < 1:15434/248‑1 (MQ=255) tcctgACAGATATCCGCGCCTCTGCCGTGTGCGTGATTATGTCCGTAAGCCTTATTGGCACCATTGTTCCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCGCGCTGTGTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAATC‑CAGCTATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGt < 1:291630/246‑1 (MQ=255) cccGACAGATATCCGCGCCTCTGCCGGGTGCGTGATTATGTCCTTAAGCCGTATTGGCTCCATTGTTTCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGtt < 1:259084/250‑1 (MQ=255) tGCCGTGGGCGTGATTATGTCCTTAAGCCGTATTGGCACCATTGTTTCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAAt > 1:308730/1‑216 (MQ=255) gTGATTCTGTCCTTAAGCCGTATTGGTACCATGGTTTCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCGAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATattatt < 2:136059/251‑1 (MQ=255) tGATTATGTCATTAAGACGTATTAGCACCATTGTTTCGACCTGGGCACTACCGATCTTTATCAATAATTACAGTATCAGTAACACGATGCTAATGGGGGCGGAAATCTCTCTGTTTGGCTGGTTGATTTCCGTAGCGTTTCCCCCGGGGGCTCGAGGGATGGGACGGGAGCAGAC‑CAGCAATATGACGATCCGCGGGCAGAGAAAGAGGTAAATTAGTCAGAGTTCTCACTTTGGTGAATCAGtattttg > 2:82843/1‑247 (MQ=255) tCCTTAAGCCGTATTGGCACCATTGTTTCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGCGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGCGAATGGGGCAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACtata > 1:21568/1‑249 (MQ=255) ccGTATTGGCACCATTGTTTCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTCTCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGGCCCGGAGACTCGAGGGATGTCACTTGCGCA‑ACACAGCAATCTGTAGATCCGCGGGCAGGGAATGGGGTAAATTGATCAGATTTATCTCTTTTCTGAATCAATATTATTGACTATTAGCcgcgggg > 2:331374/2‑248 (MQ=255) tCGACCTGGGCACTGCCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTtg < 1:295174/250‑1 (MQ=255) ataatTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGc > 1:3028/1‑251 (MQ=255) gggTATCTCGCTGTTTGGCTTGTTGCTTTCAGTAGCGTTTGCGCCGGAGACTCGAGGGATGTCACTGGCGAAAAC‑CAGCAATATGAAGATCAGCGGGCAGAGAATGGGGTAAATTGTTCAGATGTCTCTCTTTGCTGAATCAATTTTATTGACTATAAGCCGAGTGATAATATGATTAAGCTTTGTGGGAAAACAAAGGCTTAATCACGCGGGCTACCTATGAGTCTTATAATTTATGCACAACCGTATc > 2:236761/1‑250 (MQ=255) tttgtgATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATAGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCAt < 2:107907/241‑1 (MQ=255) ttgttgATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATAGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCAt > 1:107907/1‑245 (MQ=255) tgttgATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAAt < 1:186540/250‑1 (MQ=255) cGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAAc < 1:145615/251‑1 (MQ=255) ccccGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCaa < 1:331374/251‑1 (MQ=255) ccGGAGACTCGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAgg > 1:273174/1‑251 (MQ=255) cGAGGGATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAGGACGCTGGaa < 1:93110/251‑1 (MQ=255) gggATGTCACTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGTATGGGGTAAATTGTTCAGTTTTCTCTCTTTTCTGAATAAATATTATTGACTATATGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGAAATCACGCGGGCTACCTATGATTATTATAATTTATGCGCATCCGTATCTGCATCATTCCCATGCGAATAAACTGATGCTTGAACCGGCAAGGACTCTGGaatgt > 1:341402/1‑248 (MQ=255) cTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAggccg > 2:232034/1‑230 (MQ=255) cTGGCGCAAAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAGGACg < 1:232034/233‑1 (MQ=255) | CCTAATGAACTCTTCCCGACAGATATCCGCGCCTCTGCCGTGGGCGTGATTATGTCCTTAAGTCGTATTGGCACCATTGTTTCGACCTGGGCACTACCGATCTTTATCAATAATTACGGTATCAGTAACACGATGCTAATGGGGGCGGGTATCTCGCTGTTTGGCTTGTTGATTTCCGTAGCGTTTGCCCCGGAGACTCGAGGGATGTCACTGGCGCAGAC‑CAGCAATATGACGATCCGCGGGCAGAGAATGGGGTAAATTGTTCAGATTTCTCTCTTTTCTGAATCAATATTATTGACTATAAGCCGCGTGAATATATGACTACACTTTGTGGGAAAACAAAGGCGTAATCACGCGGGCTACCTATGATTCTTATAATTTATGCGCATCCGTATCCGCATCATTCCCATGCGAATAAACGGATGCTTGAACAGGCAAGGACGCTGGAAGGC > NC_000913/46881‑47332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |