| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,116 | T→C | Y594H (TAT→CAT) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,116 | 0 | T | C | 91.7% | 87.4 / ‑1.6 | 36 | Y594H (TAT→CAT) | thrA | fused aspartate kinase/homoserine dehydrogenase 1 |
| Reads supporting (aligned to +/- strand): ref base T (2/1); new base C (19/14); total (21/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
ACATGGCCTTAATCTGGAAAACTGGCAGGAAGAACTGGCGCAAGCCAAAGAGCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCCTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCAGTTGCGTTATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCAGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCTGGTTCGCTTTCTTATATCTTCGGCAAGTTAGACGAAGGCATGAGTTTCTCCGAGGCGACCACGCTGGCGCGGGAAATGGGTTATACCGAACCGGACCCGCGAGATGATCTTTCTG > NC_000913/1875‑2362 | gcATGGCCTAAATCTGGAAAACTGGCAGGAAGAACTGGCGCAAGCCAAAGAGCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGcggcgg < 1:328530/250‑1 (MQ=255) aaaTCTGGAAAACTGGCAGGAAGAACTGGCGCAAGCCAAAGAGCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAAGCCAAAACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGGAAAATcgc > 1:3434/2‑251 (MQ=255) gacatcgggCAGGAAGAACGGGCGCATGCCAAAGAGCGTTTTAACCTCTGGTCATTAATTTGCCACGTTAACTAATATCATCTGCTGAACCCGGTCAGTGGTGACTGCACTTCCAGCCAGGCAGTGGCGGAGCAATATGCCGACTTCTTGCGCTAATGTTTCCACGTTGGCCCGCCGAACAAAAAGGCCAACACCGCGTCGATGTATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTaa < 2:338677/244‑1 (MQ=255) gAAAACTGGCAGGAAGAACTGGCGCAAGCCAAAGAGCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTaa < 1:51367/251‑1 (MQ=255) gaaCTGGCGCAAGCCAAAGAGCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGacac > 1:204573/1‑251 (MQ=255) gcAAGCCAAAGAGCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGAGAAGGTTTCCACGGTGTTACGCCGAACAAAAAGGCCCAAACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTTTATGACACCAACGTTg > 1:333450/1‑251 (MQ=255) aaaGAGCCGTTTAATCGCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTgg < 2:163939/251‑1 (MQ=255) agagCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGCACAATAAGTCGGCTTCTTGCGCGAAGGTTTCCACGTTGTCACGACGGACAAAAAAGCCAAACCCTCGTAGCTGGGTTACTTACCA‑CTGTTGCGTCATGACGCGGAAAAATCGCGGCGTAACTTCCACTATGACACCAACGTTGGggatggat > 2:349742/1‑251 (MQ=255) agCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCAAGTTGTCACGCCGAACAAAAAGGCCAACACCCCGTCGCTGGCTTACT‑AACATCTGTTGCGTCATGCGGCGGAAAAATAGCGGCGTAAATTCCTCTATGACCACAACGTTGGGGCTGGAtt > 1:50060/1‑250 (MQ=255) aaTCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTGTCCACGTTGTCACGCCGAACAAAAAGGCCAACTCCTCGTCGATTGATTACT‑ACCTTCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAAGTCCTCGATGACTCCAACGTTGGGGCTGGATTACCGGTTa < 1:306139/250‑1 (MQ=255) ataaTATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCTCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCTGTTATTGAGAACCTGCAAAATCTGCTCAATGctg < 1:116819/249‑3 (MQ=255) gAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAAAACCTCGTCGGTGGGTTACT‑ACCATCTGTTTCGTCATACGGAGGAAAAATAGCGGCGTAAAATCATCTATGGCACCAAAGTTGGGGCTGGATTACCGGTTATTGAGAACCTGACAAATCGGCTCAATGctgg > 1:179705/1‑248 (MQ=255) gAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAACATGCCGACTTCTTTCGCGAAGGTTTCCCCGTTGTCACGCCGAACAAAAAAGCCACCACCTCGTCGGTGGATTCAT‑CACATCTGTTGCGGCATGCGGCGGACAAATCCCGGCGCAACTTACTCTTTAACACCAACGTTGGGGCGGGATTTCCGGTTATTTATACACTGCAAAAACTGCCCAATGctgg > 2:37166/1‑248 (MQ=255) gctgAACCCGGTCATTGTTGACCGCACGTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAAtt < 1:72705/249‑1 (MQ=255) tgAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACCAAAAGGCCAACACCTCGTCGATGGATTAAT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGGGATGAATtgatg > 1:365732/1‑251 (MQ=255) cccGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCCTGCGCGAAGGTTTCCCCGTTGTCACGCCGACCAAAAAGGCCAACACCTCGTCGATGGATTACT‑CCCATCAGTTGTGTTATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTCTGACACCAACGTTGGGGCTGGGTTACCGGTTATTGAGACCCTGCAAAATCTGCTCCATGTAGGTGATGCATTGATGAAGt > 1:47531/1‑251 (MQ=255) ggTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTGTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGTATTGATGAAGTtct < 1:305939/251‑1 (MQ=255) ttCATTGTTTACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATACCGACTTCTTGCGCGAAGGGTTCCACGTTGTCACGCCAAACAAAAAGGCCAAAACCTCGTCGTTGTATTAAT‑ACCATCTGTTAGGTCATACTGCGGAAAAATCGCGGAGTATATTACTATTAGAAAACAACGTTGGGACAGGATTAACGGTGATTGAGAAACCGAACAATCTGCACAGTGCTGGTAGTGAATTTATGAAgagctc > 2:264943/2‑246 (MQ=255) cACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCAttctttcag < 1:154121/251‑3 (MQ=255) cagGCAGTGGCGGATCAATATGCCGACTTCCTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCAGTTGCGTTATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCAGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCTGGTTCGCTTTc > 1:193580/1‑251 (MQ=255) atatGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGt > 1:62486/1‑251 (MQ=255) aatGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATTGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGtt < 2:62486/250‑1 (MQ=255) atGCCGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGtt > 1:100147/1‑250 (MQ=255) atGCCGAATTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATATGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCACGttt > 2:161573/1‑250 (MQ=255) ccGACTTCTTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGTTAGAc < 1:37166/251‑1 (MQ=255) ttcttGCGCGAAGGTTTCCACGTTGTCACGCCGAACAACAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTg > 1:89547/5‑159 (MQ=255) ttcttGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTg < 2:89547/155‑1 (MQ=255) gAAGGTTTCCCCGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAACATCGCGGCGTCATTTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGACACTGCAACATCTGCTCAATGCTGGTGATGAATTGATGACGTTCTCCGTCATTCTTTCGGGTCCGCTTTCTTATATCTTCGGTACGTTAGACGAAGGCATGAtttt > 2:208696/1‑251 (MQ=255) gAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGTTAGACGAAGGCATGAGttt > 1:80426/1‑251 (MQ=255) aaGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGTTAGACGAAGGCATGAGTTtc > 1:77929/1‑251 (MQ=255) actttGTCACGCCGACCAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATGAGTTGTGTTTTGCGGCGGAAAAAGCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTAGTGAGAACCTGCAAAATCGGCTCAATGCAGGTGATGAATTGATGAATTGCTCCGGCATTCGTTCTGGTGCGCTTTCGTATATCTTCGGGAAGTTAGGCGAAGGCATCAGTTGCTCCGAGGCg < 2:47531/248‑1 (MQ=255) aCAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATATTCGGCAAGTTAGACGAAGGCATGAGTTTATCCGAGGCGACTACTCTGGCGCgg > 1:215758/1‑251 (MQ=255) acCTCGTAGATGGATTACT‑ACATTCTGTAGCGTCATGCGGAGGACAAATCGCGGCGTAAATTCCTCTATGACACCCACGTTGGGGCTGGATTACCGGTTACTGAGAACCTGCACCATTTGCTCAATGCTGGTGATGCATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGTTAGACGAAGGCATGAGTTTCTCCGAGGCGACTACTCTGGCGCGGATAATGGGTTATAc > 2:142373/1‑251 (MQ=255) tcgtcgATGGATTACT‑ACCATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGTTAGACGAAGGCATGAGTTTCTCCGAGGCGACTACTCTGGCGCGGGAAATGGGTTATACCg > 1:137882/1‑250 (MQ=255) cATCTGTTGCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGTTAGACGAAGGCATGAGTTTCTCCGAGGCGACTACTCTGGCGCGGGAAATGGGTTATACCGAACCGGATCCGCGAgatga < 1:288394/251‑1 (MQ=255) gCGTCATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCTGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCAGGTTCGCTTTCTTATATCTTCGGCAAGTTAGACGAAGGCATGAGTTTCTCCGAGGCGACTACTCTGGCGCGGGAAATGGGTTATACCGAACCGGATCCGCGAGATGATCTTTCTg < 1:237066/251‑1 (MQ=255) | ACATGGCCTTAATCTGGAAAACTGGCAGGAAGAACTGGCGCAAGCCAAAGAGCCGTTTAATCTCGGGCGCTTAATTCGCCTCGTGAAAGAATATCATCTGCTGAACCCGGTCATTGTTGACTGCACTTCCAGCCAGGCAGTGGCGGATCAATATGCCGACTTCCTGCGCGAAGGTTTCCACGTTGTCACGCCGAACAAAAAGGCCAACACCTCGTCGATGGATTACT‑ACCATCAGTTGCGTTATGCGGCGGAAAAATCGCGGCGTAAATTCCTCTATGACACCAACGTTGGGGCTGGATTACCGGTTATTGAGAACCTGCAAAATCTGCTCAATGCAGGTGATGAATTGATGAAGTTCTCCGGCATTCTTTCTGGTTCGCTTTCTTATATCTTCGGCAAGTTAGACGAAGGCATGAGTTTCTCCGAGGCGACCACGCTGGCGCGGGAAATGGGTTATACCGAACCGGACCCGCGAGATGATCTTTCTG > NC_000913/1875‑2362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |