| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 21,619 | A→G | R71R (AGA→CGG) | ribF → | bifunctional riboflavin kinase/FMN adenylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 21,619 | 0 | A | G | 96.7% | 84.4 / ‑4.3 | 31 | R71R (AGA→CGG) | ribF | bifunctional riboflavin kinase/FMN adenylyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (17/12); total (18/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.55e-01 | |||||||||||
TCGGACGATTTTCACTGTTTTGAGCCAGACATGAAGCTGATACGCGGCATACATAATCTCAGCCAGGCCCCGCAAGAAGGGTGTGTGCTGACTATTGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCAAGACTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCATTTGCGCGTAAAATTTCTTGCCGTAGGTGATGATTTCCGCTTTGGCGCTGGTCGTGAAGGCGATTTCTTGTTATTACAGAAAGCTGGCATGGAATACG > NC_000913/21377‑21848 | tCGGACGATTTTCACTGTTTTGAGCCAGACATGAAGCTGATACGCGGCATACATAATCTCAGCCAGGCCCCGCAAGAAGGGTGTGTGCTGACTATTGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCg > 1:14219/1‑251 (MQ=255) cGGACGATTTTCACTGTTTTGAGCCAGACATGAAGCTGATACGCGGCATACATAATCTCAGCCAGGCCCCGCAAGAAGGGTGTGTGCTGACTATTGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGAccc < 1:120063/249‑1 (MQ=255) gcttttCACTGTTTTGAGCCAGACATGAAGCTGATACGAGGCATACATAATCTCAGCCAGGCCCCGCAAGAAGGGTGTGTGCTGACTATTGGTAATTTCGACGGCGTGCATCGCGGACATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGAACCTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAATGCCCCGGCACGTCTGCCCCGCCTGCg > 2:185032/3‑251 (MQ=255) aCTGTTTTGAGCCAGACATGAAGCTGATACGCGGCATACATAATCTCAGCCAGGCCCCGCAAGAAGGGTGTGTGCTGACTATTGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGaaaa > 1:6304/1‑250 (MQ=255) aTGAAGCTGATACGCGGCATACATAATCTCAGCCAGGCCCCGCAAGAAGGGTGTGTGCTGACTATTGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGc > 1:224121/1‑248 (MQ=255) cAGGCCCCGCAAGCAGGGTGTGTGCTGACTATTGGTAATTTCGAAGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAACGCCCCGGCCAGGCTGACCCGGCCGCGGGGAAAGCTGCGTTACCTTGCAGAGTGTGGCGTTGAATACATGCTGTGCTGGCGttt > 2:42420/1‑251 (MQ=255) gCAAGAAGGGAGTGTGCTGACTATTGGTAATTTCGACTGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTAGTAGGAAGACGGTCGAATGCGCACCATACCGGAGATGGTGATGCCTTTTGAACGTAAAGCCCGGGAACTATTCGCTACCGAGAAAGCACCAGCACTGCTGACCAGGCAGCGGGAAAACCTACGCTACCATGCTGAGTAGGGCGTTGATAACGTgtgttgctgacgtatcgacagt > 2:206823/1‑229 (MQ=255) tgtgCTGACTATTGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑t > 1:323738/1‑251 (MQ=255) gACTATTGGTGATTTCGACGGCGTGCAGCCGGGTCATAGCGCGCTGTTACAGGTGTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAAACTCAACCACTGGAACTGTTTGCTACCGATAAAGTCCCGGCACGGCTGACCCGGCGGCGGGAAAAACTGCGTTACCTTGCAGAGTGGGGCGTTTATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAAcc < 2:82146/250‑1 (MQ=255) gACTATTGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGCTAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAACAACTGCGTTCCCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACcg > 1:268608/1‑251 (MQ=255) tGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCaa > 1:383935/1‑250 (MQ=255) aaatgcGACGGAGTGCATCGCGGTAGTCTCGCGCTGTTTCAGTGCTTGCAGGAAGAAGGTCGCAAGCGCAACTTATCGGTGATGGTGATGCTTGTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCTCCGGCACGGCTGTCCCGGCTGCGGGAAAATCTGCGGTACCTTGCAGATTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGGCAGTTGTTTCGCGGCG‑TTAACCGCGCAAAAtt < 2:335170/245‑1 (MQ=255) cGACGGCGGTCATCGCGGTTATCGCGCGCGGTGACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGGGATGGTGATGCTTTTTGTACCTCAACCACTGGAACTGGTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTtcatc < 2:224121/250‑1 (MQ=255) gCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGAt > 1:107041/1‑251 (MQ=255) cgcgGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTggg > 1:172048/1‑250 (MQ=255) cgGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTg > 1:136435/1‑250 (MQ=255) gTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCCAAATTTCATCAGCGATCTTCTGGTGa > 1:378035/1‑249 (MQ=255) gcgcTGTTAAAGGGCTTGCAGGCAGAAGGACGCAAGCGCAACTTAACGGTGATGGTGATGCTTTTTGCACCTCAACAACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAAATGCGTGAACTTGCAGAGTGAGGCGTTGATTACGGGCTGTGCGGGAGTTTCGAGAGGGGTTTCG‑GGCGGTGAAACGCGAAAACTTTCCTCAGCGATATTCTTGTGacagttttgcc > 2:271038/1‑241 (MQ=255) gTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCTTTTGCGCGTaa < 1:80751/251‑1 (MQ=255) gggCTTGCAGGAAGAAGGGCGCAAGCGCACCTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCTTTTGCGCGTAAAATTTc < 2:323738/251‑1 (MQ=255) caagcgctaATTACCTGTGATTTTGATGATTTTTGCACCTCAACCATTGGAACTGTTAGGTGCCGAAAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCGTGCAGAGTGTGTCGTTGATTACGTGCTGTGCTTGCGTTTCGTCAGTCGGTTCGCGGCG‑TTAACCGCTCAAAATTTCATCAGCGATCTTCTGGGGAAGCTTTAGCGCGTATAATTTCTGGCCTTAGGTGATGATTTca < 2:27179/251‑2 (MQ=255) caagcgcaaCTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCTTTTGCGCGTAAAATTTCTTGCCGTAGGTGATGATTTcc > 1:326115/1‑251 (MQ=255) gcgtaacgtACCTGTGATGGTGATGTTTGTTGACCCTCGACCACTGGAACTGTTTGCTTCCGATAAAGGCCCGGTACGGCTGACCCGGTTGCTGTAAAAACTGTGGTACCTTGCATAGTGCGTCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCTCGGCT‑TTAACCGCGTAAAAGTTCATCAGCGATCTTCTGGTGAAGCTTTTGCGCGTAAAAGTTCTTGCCGTAGGTGATGGTGTCCGCt < 2:233097/243‑1 (MQ=255) ttACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGAGAAGCTTTTCCGCGTAAACTTTCTTGCCGTAGGGGATGATTTCCGCTTTGtcgc > 2:88362/1‑251 (MQ=255) ggtgatggtgatGCTTTTGGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCAAGACTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTTCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGTTGAAGCATTTGCGCGTAAAATTTCTTGCTGTAGGTGATGATTTCCGCTTTGGCGCTGGTc < 2:146145/251‑1 (MQ=255) tgatgCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGGACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCgcgg < 2:105174/147‑1 (MQ=255) tgatgCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGGACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCgcgg > 1:105174/1‑147 (MQ=255) gttGAACCTCAACCCCCGGAACTGTTGGGTACCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACTTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCTTTTGCGCGTAAAATTTCTTGCCGTAGGTGATGATTTCCGCTTTGGCGCTGGTCGTGAAGGCGATTTCt < 2:14219/249‑1 (MQ=255) ggAACTGTTTGCTACCGATAAAGCCCCGGCGCGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCTTTTGCGCGTAAAATTTCTTGCCGTAGGTGATGATTTCCGCTTTGGCGCTGGTCGTGAAGGCGATTTCTTGTTATTACAGAAAGCTg < 1:118955/251‑1 (MQ=255) aCCGATAAAGCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCTTTTGCGCGTAAAATTTCTTGCCGTAGGTGATGATTTCCGCTTTGGCGCTGGTCGTGAAGGCGATTTCTTGTTATTACAGAAAGCTGGCATGGAATACg < 1:88362/250‑1 (MQ=255) gCCCCGGCACGGCTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCTTTTGCGCGTAAAATTTCTTGCCGTAGGTGATGAtt > 1:122260/1‑178 (MQ=255) | TCGGACGATTTTCACTGTTTTGAGCCAGACATGAAGCTGATACGCGGCATACATAATCTCAGCCAGGCCCCGCAAGAAGGGTGTGTGCTGACTATTGGTAATTTCGACGGCGTGCATCGCGGTCATCGCGCGCTGTTACAGGGCTTGCAGGAAGAAGGGCGCAAGCGCAACTTACCGGTGATGGTGATGCTTTTTGAACCTCAACCACTGGAACTGTTTGCTACCGATAAAGCCCCGGCAAGACTGACCCGGCTGCGGGAAAAACTGCGTTACCTTGCAGAGTGTGGCGTTGATTACGTGCTGTGCGTGCGTTTCGACAGGCGTTTCGCGGCG‑TTAACCGCGCAAAATTTCATCAGCGATCTTCTGGTGAAGCATTTGCGCGTAAAATTTCTTGCCGTAGGTGATGATTTCCGCTTTGGCGCTGGTCGTGAAGGCGATTTCTTGTTATTACAGAAAGCTGGCATGGAATACG > NC_000913/21377‑21848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |