| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 18,322 | C→T | G278G (GGC→GGT) | nhaA → | Na(+):H(+) antiporter NhaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 18,322 | 0 | C | T | 96.3% | 69.5 / ‑5.0 | 28 | G278G (GGC→GGT) | nhaA | Na(+):H(+) antiporter NhaA |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (9/17); minor base G (1/0); total (11/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.33e-01 | |||||||||||
GGTGCACGCCGCACGGGCGTCTATATTCTTGTTGGCGTGGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACTCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTGCACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGCGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGTGGTGGGGATCCTGTGCGGTATCGGTTTTACTATGTCTATCTTTATTGCCAGCCTGGCCTTTGGTAGCGTAGATCCAGAACTGATTAACTGG > NC_000913/18089‑18568 | ggggtaCGCCGCGCGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGGTCACGCAACCCTGGCGTGGGTAATTGTCTGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCtt < 2:274786/246‑1 (MQ=255) gccgcACGAGCGTCTATATTCTGGTTGGCGTCGTGTTGTGGACTGCGGTGTTGCAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCCTGGGCGTTCTCCAGCGAAGCGCCTGGGGCCTGTGTTAAACCCGTTGTGGGCGTCTCTGATTTTGCCGCTTTTTGCATTTGCTAATG‑TGGACGTTTCAC‑TTAAAGGTGTCACGCTGGATGGCTTTACCTcc > 2:124633/1‑251 (MQ=255) gggCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGc < 1:99714/251‑1 (MQ=255) ggttgGCGTAGTGTTGTGGACTGTGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTTTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGatcat < 1:262844/248‑1 (MQ=255) gttgGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGc > 1:65068/1‑251 (MQ=255) gggTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTg < 1:147949/251‑1 (MQ=255) ggCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGgcgc > 1:179129/1‑251 (MQ=255) aaTTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTg < 1:124633/250‑1 (MQ=255) ttGTCGGATTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTGCACCCGTGGGTG‑CGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGCGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTTGCGCTGCGTTTGAAAc > 2:163086/1‑251 (MQ=255) tCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGCTTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTg > 1:76759/1‑251 (MQ=255) tttGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGATTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCGTCTGCCTGAgg > 1:351223/1‑251 (MQ=255) ttGAAAGAGAAGCATGGGCGGTCTCCAGCTAAGCGACTGTAGCAGTTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGATGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGTATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGAGTGGCAACCCGCTGGGGATTAGTGTGTTCTGCTGTTTGGCGCTTCGTTTGAAACTTGCGCATCTTCCTGa < 2:76759/248‑1 (MQ=255) gAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTTCTCCCGTGGGTGTCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGaa < 1:264183/251‑1 (MQ=255) agaAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGATTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACt > 1:250243/1‑251 (MQ=255) gaggCATGGGCTTTCTCCATCTAAGCTACTGGTGCTTGTGTTTCCCCCGTGGGTGGCTTATCTTATTTTGTCGCTGTTTGCTTTTTGTTATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACTCTGGATGGCTTGACCTCCTTTCTGCTTTTGGGGATCAGCTCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCAGCTTGTTGGTGCTGGGTTTTAAACTGTCGCTTCTGCCTGAGGGATCGACtt < 2:268768/248‑1 (MQ=255) gCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACGCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACGTATCGGCaa > 2:338480/1‑250 (MQ=255) cAGCGAAGCGACTGGAGCATGTGTTACACCCGCGGGAGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGTCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTACTCATCAACTTAtgg > 2:133666/1‑249 (MQ=255) gcgaagcgaCTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTAtggcggt < 1:232294/251‑1 (MQ=255) ggaagcgaCTGGTGCATTTGTTACCCCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCGCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGGCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTAtggcggtg < 2:129482/250‑1 (MQ=255) agcgaCTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGCGGTgggg < 1:137060/251‑1 (MQ=255) cgaCTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑TGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTctgc > 1:358010/1‑177 (MQ=255) gaCTTGAGCATGAGTTACACCCGTGGGTGGCGTATCTGATTTAGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGGGTCACGATGGCTGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGACTTGCTGCTTGGCAAACCGCTGGGGATTAGTCTGTTCTGATGGTTGGCACTGCGATTGAAACAGGCGCATGTGCCTGGGGGAACGACTTATCAGCATATTATGGCGGAggggttt > 2:285834/1‑248 (MQ=255) gagcttgtgttttgccagggggtggCTTATCTTGTTTTGCCGCTAGTTGCAATTGCTAATGCTTG‑CGTTTCACGTG‑AAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGTCATTGTGGATCATCGCGGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTGTGTGCTGCGGGTTTGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTAGCAGCAAATTATGGCGGTGGGGATCCtgt < 2:32725/231‑1 (MQ=255) acACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGCGGTGGGGATCCtg < 1:379706/237‑1 (MQ=255) cATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGCGGTGGGGATCCTGTGCGGTATCGGTTTTACTATGTCTATCTTTATTGCCAGCCTGGCCTTTGGt < 1:285834/251‑1 (MQ=255) aTTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGTGTCACGGTGGATGGCTTGACCTCCATGCTGCCATTGAGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGCGGTGGGGATCCTGTGCGGTATCGGTTTTACTATGTCTATCTTTATTGCCAGCCTGGCCTTTGGTa < 1:215110/251‑1 (MQ=255) ttGCTAATGCTGG‑CGTTTCAC‑GGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGTGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGCGGTGGGGATCCTGTGCGGTATCGGTTTTACTATGTCTATCTTTATTGCCAGCCTGGCCTTTGGTAg < 1:58575/250‑1 (MQ=255) aaGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGCGGTGGGGATCCTGTGCGGTATCGGTTTTACTATGTCTATCTTTATTGCCAGCCTGGCCTTTGGTAGCGTAGATCCAGAACTGATTAACTgg < 1:2817/251‑1 (MQ=255) | GGTGCACGCCGCACGGGCGTCTATATTCTTGTTGGCGTGGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACTCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTGCACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCAC‑TGCAAGGCGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGTGGTGGGGATCCTGTGCGGTATCGGTTTTACTATGTCTATCTTTATTGCCAGCCTGGCCTTTGGTAGCGTAGATCCAGAACTGATTAACTGG > NC_000913/18089‑18568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |