| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 18,253 | G→A | L255L (TTG→TTA) | nhaA → | Na(+):H(+) antiporter NhaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 18,253 | 0 | G | A | 93.9% | 83.0 / ‑5.8 | 35 | L255L (TTG→TTA) | nhaA | Na(+):H(+) antiporter NhaA |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (16/15); total (18/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGCACGCCGCACGGGCGTCTATATTCTTGTTGGCGTGGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACTCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTGCACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGCGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGTGGTGGGGATC > NC_000913/18011‑18487 | tACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCACGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCgtg > 1:129482/1‑251 (MQ=255) gACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGCACGCCGCACGGGCGTCTATATTCTTGTTGGCGTGGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACTCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTCTGAAAGAGAAGCATGGGCGTTCTCCAGTGACGCGACTGGAGCATGTGTTGCACCCGTGGGTGGCGt > 1:183828/1‑250 (MQ=255) cTTATCGATGGCCTCTCTTGGCGTCGCGGCTGAAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCACAGGCGACTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTACTTTGAAAAAGAAACCTGGGAGATCTCCAGCAAAACGACTGGCGCATGTGTTACACCCATGGGTGGCgattc > 1:165331/1‑247 (MQ=255) ttggttgCCTCTCTTGGCGTCGCGTCTGTAGGAATTTCGGTACGTGCGGTATTGAACCTGTTTGGTGTACGCCGCACGGGCGTCTATCTTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGa < 2:311070/244‑1 (MQ=255) aTGGCCTCTCTTGGCGTCGCGGCTGTAGCAATGGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCACGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACTCCCGTGGGTGGCGTATCTGAtttt < 1:31829/251‑1 (MQ=255) ggCCTTTCTTGGCGTCTCGTCTGTATCAATTGTGGTAATAGCGGTATTGAATCTGTGTGTTGTACGCCGCACGGGTGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCGTCTTTATTCCTGTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTg < 2:371468/250‑1 (MQ=255) ccTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCACGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCg < 1:203872/251‑1 (MQ=255) ggCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCACGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTg < 1:258969/250‑1 (MQ=255) gTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCACGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTCACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCAtt > 1:148865/1‑251 (MQ=255) gCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCACGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGCCTGTAGCATGTGTTACACCCGTGGGGGGCGTATCTTGTTTTGCCGCTGTTTgactttgcga > 2:137060/1‑241 (MQ=255) aGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGTACGCCGCACGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTg > 1:226657/1‑251 (MQ=255) cGGTACTCGTGGTATTGAATCTGTTTGGTGTACGCCGCCCGGGCGGCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCa < 2:226657/251‑1 (MQ=255) aCTCGCGGTATTGACTCTGTGTGGTGTACGCCGCACGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCCGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGGGGCGGATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCCCTGc > 1:86047/1‑251 (MQ=255) ggggtaCGCCGCGCGGGCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGGTCACGCAACCCTGGCGTGGGTAATTGTCTGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCtt < 2:274786/246‑1 (MQ=255) gccgcACGAGCGTCTATATTCTGGTTGGCGTCGTGTTGTGGACTGCGGTGTTGCAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCCTGGGCGTTCTCCAGCGAAGCGCCTGGGGCCTGTGTTAAACCCGTTGTGGGCGTCTCTGATTTTGCCGCTTTTTGCATTTGCTAATG‑TGGACGTTTCACTTAAAGGTGTCACGCTGGATGGCTTTACCTcc > 2:124633/1‑251 (MQ=255) gggCGTCTATATTCTGGTTGGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGc < 1:99714/251‑1 (MQ=255) ggttgGCGTAGTGTTGTGGACTGTGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTTTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGatcat < 1:262844/248‑1 (MQ=255) gttgGCGTAGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGc > 1:65068/1‑251 (MQ=255) gggTTCACGCAACCCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTg < 1:147949/251‑1 (MQ=255) ggCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGgcgc > 1:179129/1‑251 (MQ=255) aaTTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTg < 1:124633/250‑1 (MQ=255) ttGTCGGATTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTGCACCCGTGGGTG‑CGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGCGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTTGCGCTGCGTTTGAAAc > 2:163086/1‑251 (MQ=255) tCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGCTTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTg > 1:76759/1‑251 (MQ=255) tttGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGATTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCGTCTGCCTGAgg > 1:351223/1‑251 (MQ=255) ttGAAAGAGAAGCATGGGCGGTCTCCAGCTAAGCGACTGTAGCAGTTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGATGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGTATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGAGTGGCAACCCGCTGGGGATTAGTGTGTTCTGCTGTTTGGCGCTTCGTTTGAAACTTGCGCATCTTCCTGa < 2:76759/248‑1 (MQ=255) gAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTTCTCCCGTGGGTGTCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGaa < 1:264183/251‑1 (MQ=255) agaAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGATTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACt > 1:250243/1‑251 (MQ=255) gaggCATGGGCTTTCTCCATCTAAGCTACTGGTGCTTGTGTTTCCCCCGTGGGTGGCTTATCTTATTTTGTCGCTGTTTGCTTTTTGTTATGCTGG‑CGTTTCACTGCAAGGTGTCACTCTGGATGGCTTGACCTCCTTTCTGCTTTTGGGGATCAGCTCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCAGCTTGTTGGTGCTGGGTTTTAAACTGTCGCTTCTGCCTGAGGGATCGACtt < 2:268768/248‑1 (MQ=255) gCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTACACGCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACGTATCGGCaa > 2:338480/1‑250 (MQ=255) cAGCGAAGCGACTGGAGCATGTGTTACACCCGCGGGAGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGTCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTACTCATCAACTTAtgg > 2:133666/1‑249 (MQ=255) gcgaagcgaCTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTAtggcggt < 1:232294/251‑1 (MQ=255) ggaagcgaCTGGTGCATTTGTTACCCCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCGCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGGCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTAtggcggtg < 2:129482/250‑1 (MQ=255) agcgaCTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGCGGTgggg < 1:137060/251‑1 (MQ=255) cgaCTGGAGCATGTGTTACACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑TGTTTCACTGCAAGGTGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTctgc > 1:358010/1‑177 (MQ=255) gaCTTGAGCATGAGTTACACCCGTGGGTGGCGTATCTGATTTAGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGGGTCACGATGGCTGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGACTTGCTGCTTGGCAAACCGCTGGGGATTAGTCTGTTCTGATGGTTGGCACTGCGATTGAAACAGGCGCATGTGCCTGGGGGAACGACTTATCAGCATATTATGGCGGAggggttt > 2:285834/1‑248 (MQ=255) | TACACTAATGACTTATCGATGGCCTCTCTTGGCGTCGCGGCTGTAGCAATTGCGGTACTCGCGGTATTGAATCTGTGTGGTGCACGCCGCACGGGCGTCTATATTCTTGTTGGCGTGGTGTTGTGGACTGCGGTGTTGAAATCGGGGGTTCACGCAACTCTGGCGGGGGTAATTGTCGGCTTCTTTATTCCTTTGAAAGAGAAGCATGGGCGTTCTCCAGCGAAGCGACTGGAGCATGTGTTGCACCCGTGGGTGGCGTATCTGATTTTGCCGCTGTTTGCATTTGCTAATGCTGG‑CGTTTCACTGCAAGGCGTCACGCTGGATGGCTTGACCTCCATTCTGCCATTGGGGATCATCGCTGGCTTGCTGATTGGCAAACCGCTGGGGATTAGTCTGTTCTGCTGGTTGGCGCTGCGTTTGAAACTGGCGCATCTGCCTGAGGGAACGACTTATCAGCAAATTATGGTGGTGGGGATC > NC_000913/18011‑18487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |