| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 393 | T→G | R19R (CGT→CGG) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 393 | 0 | T | G | 92.0% | 50.9 / ‑0.8 | 25 | R19R (CGT→CGG) | thrA | fused aspartate kinase/homoserine dehydrogenase 1 |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base G (13/10); total (15/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.69e-01 | |||||||||||
CGCACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGACGGGACTCGCCGCCGCCCAGCCGGGGTTCCCGCTGGCGCAATTGAAAACTTTCGTCGATC > NC_000913/152‑622 | cgcACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGat > 1:270520/1‑250 (MQ=255) cgacagaTACAAATTACAGAGTACCCAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAACAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGCAACGAAGTAACAACCATGCGAGTGTTGAAGTACGGAGGTACATCAGTGGCA‑AATGAAGAACGGTTTCTGGGGGTTGGCGATTTTCtt > 2:245490/2‑250 (MQ=255) aaaTTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGAGCTTTTTTTT‑CGACCAAAGTTAACGGGGTAACAACCATGCGAGTTTTGAAGTTCTGCGGTCCATCAGTGGCT‑AATGCAAAACGTTTTCTGCGGGTTGCCGATCTTCTGGAAAGCAATg > 1:137131/1‑251 (MQ=255) cAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCcaggc < 1:245490/251‑1 (MQ=255) gTACACAACCTCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCAAggcaggg > 1:264046/1‑251 (MQ=255) acaTCCAATAAACGCATTAGCCCCCCCATTCACACCACCATCACCATTACCACAGGTAACGGTGAGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTg < 2:81191/251‑1 (MQ=255) caccaTTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGccccct > 1:167112/1‑250 (MQ=255) ttACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGCGGCCACCGTCCTCTCTGCCCCCGCCaa > 1:95047/1‑250 (MQ=255) caaccatctccatTACCAAGGGAAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGACCGCCCATGACAGGGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACAATGCGAGTGTTTAAGTTCGGCGGTACATCAGTGGCA‑AAAGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGTAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAAGCacca < 2:108720/249‑1 (MQ=255) caacatcaccatTACCACAGGAAACGGTGCGAGCTAACGCGGAAAGGAAACACAGAAAAAAGCCCGCACCTGAAAGTGCGGGCTTTTAATT‑AGACCAAAGGTAAAACAGAAACAACGATGAGAGAGTTGAAGTTCGGAGGTACATCAATGGCACAAGACAGA‑CGGTTTATGCGGGGATCCGATATTCTGACAATCACAGGCAGGCAGGGGCAGGAGGCCACCGTACATTCTGGCACCGGCAAAATCaccg > 2:375699/4‑249 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGCGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGGCCTCTCTGCCCCCGCCCAAATCACCAACCACCtggt > 2:69040/1‑251 (MQ=255) acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCgatg < 1:281161/251‑1 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AAAGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCTCCAAAATCACCAACCAACTGGTTGCGATGTATGaaaa > 2:270049/1‑250 (MQ=255) aaaaaGCCCCCACCTTACAGTGCGTG‑TTTGTTTTTCGACAAATGTTAATGGGGTAACAACAAGGCGAGGGTTGACGTTCGGCGTTACATCAGTGGCA‑AATGCAGAACGTTTTCGGGGGGTTGCCGATATTCTGAAAAGCAATGCCAGGCAGGGGGAGGTGGCCACCGTCCTCTCTTCCCCCGCCAAAATCACCAACCCCCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAata < 2:326251/251‑1 (MQ=255) cTGACAGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCg > 1:122160/1‑250 (MQ=255) gACAGTGCGGGCTTTTTTTT‑CGACCAAAGGGAATGAGGTAACAACCATGCGAGTGTGGAAGTTCGGCGGTACACCAGTGGCA‑AATGCAGAACGTTGTCTGCGGGTTGCCGATATTCTGGAAAGCAAGGCCAGGCAGGGTCAGTTGGCACCCGTCCTCACGGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGa < 2:336001/249‑1 (MQ=255) aGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCttt < 1:78381/225‑1 (MQ=255) aGTGCGGGCTTTTTTTT‑CGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTagttcggaagggcgtcgtgtagggg > 2:78381/1‑226 (MQ=255) aaCGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGACGGGACTcgc > 1:182570/1‑251 (MQ=255) aaCGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGACGGGACTcg < 1:57010/250‑1 (MQ=255) caacCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGACGGGACTCGCCGCCGccc > 1:4730/1‑249 (MQ=255) aGTGTTGAAGTTCGGCGGTACAGCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCGGAAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGGGGCGATGATTGAAAAAACCATTAGCGACCAGGATGCTTTACCCCATATCAGCGATGCCGAACGGATTTTTGCCGAACTTTTGCCGGGACCCGCCCCCGCCCAGCCgggaatac > 2:192985/1‑246 (MQ=255) tGAAGTTCGGCGGTACATAAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCAAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGACGGGACTCGCCGCCGCCCAGCCGGGATTCCCGCt < 1:268501/250‑1 (MQ=255) gAAGTTCGGCGTTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGACGGGACTCGCCGCCGCCCAGCCGGGATTCCCGCTg < 1:114903/250‑1 (MQ=255) a‑aaTGCAGAACGTTTTCTGCGGGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGACGGGACTCGCCGCCTCCCAGCCGGGATTCCCGCTGGCGCAATTGAAAACTTTCGTCGATc > 1:349926/1‑251 (MQ=255) | CGCACAGACAGATAAAAATTACAGAGTACACAACATCCATGAAACGCATTAGCACCACCATTACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGTTGAAGTTCGGCGGTACATCAGTGGCA‑AATGCAGAACGTTTTCTGCGTGTTGCCGATATTCTGGAAAGCAATGCCAGGCAGGGGCAGGTGGCCACCGTCCTCTCTGCCCCCGCCAAAATCACCAACCACCTGGTGGCGATGATTGAAAAAACCATTAGCGGCCAGGATGCTTTACCCAATATCAGCGATGCCGAACGTATTTTTGCCGAACTTTTGACGGGACTCGCCGCCGCCCAGCCGGGGTTCCCGCTGGCGCAATTGAAAACTTTCGTCGATC > NC_000913/152‑622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |