| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 17,039 | C→T | intergenic (+29/‑450) | sokC → / → nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 17,039 | 0 | C | T | 83.3% | 15.5 / ‑3.0 | 13 | intergenic (+29/‑450) | sokC/nhaA | small regulatory RNA antitoxin SokC/Na(+):H(+) antiporter NhaA |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (7/3); total (8/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
CCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATG‑CTGCTTCATTGCTCTCTTCTCCTTG‑ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGAGGCCTCGGGTTGA‑TGGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATAT > NC_000913/16794‑17216 | ccAGTTCGGAGGTGAACCACCCAGGGGTCTTTTCTCGTTCCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATG‑CTGCTTCATTGCTCTCTTCTCCTTG‑TCCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGA‑TAGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGATAGCCt < 1:58058/251‑1 (MQ=255) gTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATG‑CTGCTTCATTGCTCTCTTCTCCTTG‑ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGA‑TAGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGATAGCCTCa > 1:346756/1‑250 (MQ=255) cggatgtcatcatctcagggtccTTTTCTCGTACCCCGCGCCGCACCTACGGTGGTGATACAGATTACGATCATGGCGACAATCATCGCCTTAAG‑CTGCTTCATTGCTCTCTTCTCCTTG‑ACCTTACGGGCAGGAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGA‑TAGTAAAATATCACTC‑GTGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGATATCCGCAAGCa < 2:345543/229‑1 (MQ=255) tgtgAACCTCACAGAGGTTTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATG‑CTGCTTCATTGCTCTCTTCTCCTTG‑ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGA‑TAGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGATAGCCTCAAGCAccc < 1:310384/250‑1 (MQ=255) gtgAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATG‑CTGCTTCATTGCTCTCTTCTCCTTG‑ACCTTACGGTCAGTAAAAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGA‑TAGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGATAGCCTCAAGCACccgc > 1:184312/1‑251 (MQ=255) cAGCGCCGCCACTACGGCGGTGATAAAGATGACGATCCGGGCGACAAACATTGCCTTTTG‑CTGCTTCATTGCCCTATTCTCCTTG‑ACCTTACGGTCCGTAAAAGGCCCTCTACATGTGGTCAGCATATAGGGGGCCTCGGGGTGA‑TAGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATTAC‑TGGGACAGATAGCCTCAAGCACCCCCCGCTATTATATCGCTCTCTTTAACCCAttt > 1:383673/1‑251 (MQ=255) gcgggtaacgaattGACGATCAGGGCGAAATTCTTC‑CCTTTTGGTTGCTTCATTGCTCTCTT‑TCCTTGCACCTTGCGGTCAGAAAGATGCTCTCTCCATGTGTAAGGCATATGGGGGGCCT‑GGGTTGAATAGAAAAATACCCCTC‑GGGGTTTTTCTTAAGCTGC‑GTTCCAGTTAAGGCC‑TGAGACAAAAACCCACAACCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTa < 1:234487/238‑1 (MQ=255) cGATCAGGGCGACAATCATCGCCTTATG‑CTGCTTCATTGCTCTCTTCTCCTTG‑ACCTTACGGACAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGA‑TAGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGATAGCCTCAAGCACCCGCCGCTCTTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAgccgactc > 1:53027/1‑244 (MQ=255) cAATCATCGCCTTATG‑CTGCTTCATTGCTCTCTTCTCCTTG‑ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGA‑TAGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTATTCCTGACGAAGCCTCGCATTTTTGTgg > 2:178962/1‑251 (MQ=255) ttaagcagctTCATTGCTCTCTACGCATTG‑AACTTACGGTCAGTAAGAGGCACTCTACATGAGGTCAGCATATAGGGGGCCTCGGTTTGA‑TAGTAAAATATCACTC‑GGGGCTTTTCTCGCTCTGACGTTC‑GGCTAATGAC‑TAATGCAGATAGCATCAAGCACCAGACGCAATTATATCGCTCACGTTAACACATTGTGTTTTATAGATTCTAATCATGAAGACACCCAGCATTTTCGTGGCATAAtatttt > 2:314108/8‑251 (MQ=255) cAGCATATAGGAGGCCTCGGGTTGA‑TGGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCa > 2:182476/1‑222 (MQ=255) ggccctcggtttaataatAAAATA‑CACTCCGGGGTTTTCCTCTATCTCCCGTTC‑AGCTA‑TGCCCTGACACAAACACCCCCAACCCCCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTTATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAatat < 1:82568/234‑1 (MQ=255) gCCGTTC‑AGCTAATGCC‑TGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTTATCGCAATTATTGACGACAAGCTGGATTATTTTTGa > 1:233265/1‑199 (MQ=255) | CCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATG‑CTGCTTCATTGCTCTCTTCTCCTTG‑ACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGAGGCCTCGGGTTGA‑TGGTAAAATATCACTC‑GGGGCTTTTCTCTATCTGCCGTTC‑AGCTAATGCC‑TGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATAT > NC_000913/16794‑17216 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |