| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 12,384 | T→C | G74G (GGT→GGC) | dnaK → | chaperone protein DnaK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 12,384 | 0 | T | C | 95.0% | 47.1 / ‑3.9 | 21 | G74G (GGT→GGC) | dnaK | chaperone protein DnaK |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (13/6); total (14/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.56e-01 | |||||||||||
CCGAATATATAGTGGAGACGTTTAGATGGGTAAAATAATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGCACCACTCCTCGCGTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTAG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CTCTGTTTGCGATTAAACGCCTGATTGGTCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCCGCAGATTTCTGCTGAAGTGCTGAAAAAAATGAAGAAAACCGCTGAAGATTACCTGGGTGAACCGGTAACTGAAGCTGTTATCACCGTACCGGCATACTTTAAC > NC_000913/12138‑12603 | ccGAATAAATAGTGGAGACGTGTAGATGGGTAAAATAATTGGTATCGTCCTTGGTACTACCAACTCTTGTGGAGCGATTATGGATGGCACCACTCCTCGTGTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCGGCTAAACGGCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAACCGCCTGATTGgccgcc < 2:132076/251‑1 (MQ=255) ggAGACGTTTAGATGGGTAAAATAATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGCACCACTCCTCGTGTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACg < 1:179098/250‑1 (MQ=255) gagaCGTTTAGATGGGCAAAATAAATGGTATCGCCCTGGGTACTACCACCTCTTGTGTAGCGATTATGGATGGCACCACTCCTCGTGTGATGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGACTATACCCAGGATGGTGAAACTCTAG‑TTGGTCAGACGGCTAAACGTCCGGCAGTGACGAACCAG‑AAAACAACCCTGTTTGCGATTCAACGCCTGATTGGACACCGCTTCCAGGACga > 2:219083/1‑250 (MQ=255) gggTAAAATAATTGGTATAGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGCACCACTCCTCGTGTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTg > 1:67164/1‑251 (MQ=255) ttGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGCACCACTCCTCGTGTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCGGCTATACGTCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGCTTGGCCGCCGATTCCAGGACGGATAAGTActggt > 2:5340/1‑234 (MQ=255) ttGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGCACCACTCCTCGTGTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCg < 1:5340/238‑1 (MQ=255) caCTCGTGTGTAGCGATTATGGATTGCAACACTTCTCGTGTGCTGGAGAACGTCGTAGGCGATCGAATCTTGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCTGCTAAACGTCAGGCAGTGACGAACCCGCAAATCA‑CCCTGTTTGCTATTAAATGCCTGATTGGCAGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCCTCATGCCGTTCAAAATTATtgctgc < 1:277433/250‑1 (MQ=255) ggatggCACCACTCCTCGCGTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTAG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CTCTGTTTGCGATTAAACGCCTGATTGGTCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATgg < 1:48756/250‑1 (MQ=255) tgTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGAt > 1:381721/2‑217 (MQ=255) tgTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGAt < 2:381721/216‑1 (MQ=255) ccGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTGG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAACATTATTGCTGCTGATAACGGCGACGCATGGGCCGACGTTAAAGTCCAGAAAATGGCAccgccg > 2:134485/1‑251 (MQ=255) gCACCACGCCTTCTATAATTGCCTATACCCAGGATGGTGAAACTCTGA‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGAAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTTCAGCGTGATGTTTCCATCATGCCGTTCAAACTTATTGCTGCTGAGAACGGAGACGCATGGTTCGCACTTAAAGGCCAGACAATGGCACCGCGGCAAATCTctgct > 2:118430/1‑251 (MQ=255) cGCCTTCTATCATTGCATATACCCAGGATGGTGTAACTCTGG‑TTGGTCAGCAGGCTAAACGTCAGGCAGTGACGAACCCGAAAAACA‑CCATGTTTGCGATTCACCGCATGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATAATGCCGTTCAAAATTATTGCTGCTGCTAACGGCGACGCATGGGTCGACGTTAACGGCCAGAAAATGGCACCGCCGCAGATCTCTGCTGAAg > 1:375766/1‑249 (MQ=255) aGGATGGTGAAAC‑CTGGGTTGGTCAGCCGGCAAAACGTCAGGCATGGACGACCCCGCAAAACC‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCACCTTGCCGTACAAAATTATGGCTGCTGATAACGGCGACGCAGGGGTCGAAGTTAAAGGCAAGAAAATGGCACCGCCGCAGATCTCTGCTGAAGTGCTGAAAAAAATGAAGAAAACCGCt < 1:168419/251‑1 (MQ=255) aTGGAGAAACTCTGG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCCGCAGATATCTGCTGAAGAGCTGAAAAAAATGAAGAAAACCGCTGa > 1:151618/1‑250 (MQ=255) gTGAAACTCTGG‑TTGGTCAGCCGGCTAAACGTAAGGAAGTGACGAACCCGCAACACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAAAAGAAAAGCCTGACGTTTCCATCATGCAGTTAACAATTATTGCTGCTGATAACGGAGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCTGCAGATCTCTGATGAAGTGCGGAAAAAAATGAAGAAAACCGCTGa > 1:368451/1‑247 (MQ=255) ctgg‑TTGGTCAGCCGGCTAAACGACAGGCAGTGACGAACCCGCCAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGACAATGGCACCGCCGCAGATCTCTTCTGAAGTGCTGAAAAAAATGAATAAACCCGCTGAAGATTGCCTggg > 2:206106/4‑251 (MQ=255) aGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCCGCAGATATCTGCTGAAGTGCTGaaaaaac > 2:292988/1‑193 (MQ=255) aGTGACGAACCCGCAAAACA‑CCCTGTTTGCGATAAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCCGCAGATCTCTGCTGAAGTGCTGaaaaaaa < 1:292988/194‑1 (MQ=255) cGAACCCGCAAAACA‑CCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCCGCAGATCTCTGCTGAAGTGCTGAAAAAAATGAAGAAAACCGCTGAAGATTACCTGGGTGAACCGGTAACTGAAGCTGTTATCACCGTACCg > 1:294849/1‑251 (MQ=255) aca‑cCCTGTTTGCGATTAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCCGCAGATCTCTGCTGAAGTGCTGAAAAAAATGAAGAAAACCGCTGAAGATTACCTGGGTGAACCGGTAACTGAAGCTGTTATCACCGTACCGGCATACTTTAAc > 1:146665/1‑251 (MQ=255) ttAAACGCCTGATTGGCCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCCGCAGATCTCTGCTGaa > 1:167510/1‑149 (MQ=255) | CCGAATATATAGTGGAGACGTTTAGATGGGTAAAATAATTGGTATCGACCTGGGTACTACCAACTCTTGTGTAGCGATTATGGATGGCACCACTCCTCGCGTGCTGGAGAACGCCGAAGGCGATCGCACCACGCCTTCTATCATTGCCTATACCCAGGATGGTGAAACTCTAG‑TTGGTCAGCCGGCTAAACGTCAGGCAGTGACGAACCCGCAAAACA‑CTCTGTTTGCGATTAAACGCCTGATTGGTCGCCGCTTCCAGGACGAAGAAGTACAGCGTGATGTTTCCATCATGCCGTTCAAAATTATTGCTGCTGATAACGGCGACGCATGGGTCGAAGTTAAAGGCCAGAAAATGGCACCGCCGCAGATTTCTGCTGAAGTGCTGAAAAAAATGAAGAAAACCGCTGAAGATTACCTGGGTGAACCGGTAACTGAAGCTGTTATCACCGTACCGGCATACTTTAAC > NC_000913/12138‑12603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |