| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 11,854 | A→G | intergenic (‑68/‑309) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 11,854 | 0 | A | G | 82.8% | 62.2 / 2.6 | 29 | intergenic (‑68/‑309) | yaaI/dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Reads supporting (aligned to +/- strand): ref base A (2/3); new base G (11/13); total (13/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGTTGTATGCGTTTCACAATGCGACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGGGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGATTCAGGCACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATATGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTTGATGACGTGGTTTACGACCCCATTTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGC > NC_000913/11616‑12086 | gagTTGGATGTGGTTCACAATGCGACAGACAGGAAGTTTCAGCGACAGATCGGTGGTGTAGTGACGCGGCATTGCAATGATGCCGAGGAGTGTATGGTCGTTTGTCAGCGCCGTGCAGCACAGCAGCAGGCTAATCGCCAGGCAGGCGGAAATGGTAAAAACGGAGTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGAGGAATACCCCCT‑AGTTTACTGCTGAGAAAGAGAAGGTTCAGGTACgga < 2:265904/251‑3 (MQ=255) gCGTTTCACAATGCGACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAAtcttttc < 1:235054/250‑1 (MQ=255) ttCACAATGCGACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATcttttctttt < 1:58680/250‑1 (MQ=255) cacaATGCGACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTCACTGCTGATAAAGAGAAGGTTCAGGTACTTAATCTTTTCTTTttat < 1:103983/251‑1 (MQ=255) gACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAAttt < 1:64219/251‑1 (MQ=255) aaCAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTtg > 1:246972/1‑251 (MQ=255) gcCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAAttt < 2:91527/231‑1 (MQ=255) gcCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAAttt > 1:91527/1‑231 (MQ=255) gTTGGTTTCGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGattcat > 1:112107/1‑251 (MQ=255) cGTTACGCGGCATTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTtatc > 1:340133/1‑250 (MQ=255) aTTGCAATGACGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAAtt > 1:141012/1‑251 (MQ=255) gacgtcGAGGAGGTGATGGTCGTTTGCCTGCGCCGTGCATCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCGTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTTCTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATTAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCTGTCa < 2:141012/245‑1 (MQ=255) gcCGAGGAGTTTATGGTCGTTTGTCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCTGTCAAttt < 1:17817/251‑1 (MQ=255) agTTTATGGTCGTTTGCCTGCGCCGTGCTGCACAGCATCAGGCTAATCGACAGGCTGGCGGCAATCGGAAAAACGGGTTTCAAAAGGT‑TTCTCTTAGTGGGAAGAGTAAGAGGGATGAATACCCTAT‑AGTTTACTTCTGATAAAGAGAAGGTTCAGGTCCGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGACTGCAGTTCCTTCTTTATCTGAATATAATAGCTGTCAATTTTACGTCt > 2:317912/1‑251 (MQ=255) cagcacagcaTCAGTCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTgc < 1:198150/251‑1 (MQ=255) cagcacagcaTCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCGGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTgc < 1:308766/251‑1 (MQ=255) tAATCGCCAGGCTAGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACaaaaa > 1:304024/1‑250 (MQ=255) aTCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAACTTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCttt > 1:236528/1‑249 (MQ=255) cGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTtgat < 1:295328/250‑1 (MQ=255) aaaaaaCGGATTTCATAAGTAGTTC‑CTGAGTGGTAAGATGTATGGGGATGAAGACCCTCT‑ATTTTACTTCTGATAAAGAAAAGGTCCAGGGTCTTAATTTTTTCTTTTTATTAAAATTTTTGGTTGAATACCTTGGCTGCGAATCATTCTTTATCTTAATAAAATTTCTGACAATTTTACGTCTTTTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTTGATGAc < 2:26899/250‑1 (MQ=255) cATAAGGA‑TTCTCTTATTGGGAAGAGGTAGAGGGATGAATACCCACT‑ATGTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTAAAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTTGATGACGTGGGTTACGAc < 1:324140/250‑1 (MQ=255) cATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGGGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGATTCAGGCACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATATGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTTGATGACGTGGTTTACGAcc > 2:107641/1‑251 (MQ=255) ttAGTGGGAAGAGGTAGAGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTTGATGACGTGGGTTACGACCCCATTTAGTAGTc > 1:132076/1‑251 (MQ=255) tGGGACGAGGTAGAGGGATGCATACCCACT‑AGTTTACTGCTGATAAAGAGAAGGTTCATATACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGATGCGATTCATTATTTATCTGATTAAAATTGATGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAGTTTCTGCGCAAAAGCACAAAAAATTTTTGCATCACCCCATTGATGACGTGGGTTCGGACCACATTTagtagtgaaac > 2:340687/1‑246 (MQ=255) tAGGGGGATGAA‑ACCCGCTTAGTTTACTGACGATAAAGAGAAGATTCAGGCACGTAATTTTTTCTTTTTATTACAATTTTTTGATGATTGCCTTGGCTGCGATTCATTCTTTATATGAATAAAATGGCTGACAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTTCATCTCCCCCTTGATGACGTGGTTTACGACCCCATTTAGTAGTCAACCGCagtgagt < 2:64926/250‑1 (MQ=255) ccACT‑AGTTTACTGCTGATAAAGAGAAGATTCAGGCACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATATGAATAAAATTGCTGTCAATTTTa < 1:289882/124‑1 (MQ=255) ccACT‑AGTTTACTGCTGATAAAGAGAAGATTCAGGCACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATATGAATAAAATTGCTGTCAATTTTa > 2:289882/1‑124 (MQ=255) aGTTTACTGCTGATAAAGAGAAGATTCAGGCACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATATGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTTGATGACGTGGTTTACGACCCCATTTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGaa < 1:107641/249‑1 (MQ=255) ctgctgATAAAGAGAAGGTTCAGGTACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATCTGAATAAAATTGCTGTCAATTTTACGTATTGTCCTGCCATATAGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTTGATGACGTGGGTTACGACCCCATTTAGTAGTAAACCGCAGTAAGTGAGGATGAAAAAAAATGACATTAGGc > 2:337658/1‑250 (MQ=255) | GAGTTGTATGCGTTTCACAATGCGACAAACAGGAAGTTTCAGCGCCAGATCGTTGGTTTCGTTACGCGGCATTGCAATGGCGCCGAGGAGTTTATGGTCGTTTGCCTGCGCCGTGCAGCACAGCATCAGGCTAATCGCCAGGCTGGCGGAAATCGTAAAAACGGATTTCATAAGGA‑TTCTCTTAGTGGGAAGAGGTAGGGGGATGAATACCCACT‑AGTTTACTGCTGATAAAGAGAAGATTCAGGCACGTAATCTTTTCTTTTTATTACAATTTTTTGATGAATGCCTTGGCTGCGATTCATTCTTTATATGAATAAAATTGCTGTCAATTTTACGTCTTGTCCTGCCATATCGCGAAATTTCTGCGCAAAAGCACAAAAAATTTTTGCATCTCCCCCTTGATGACGTGGTTTACGACCCCATTTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGC > NC_000913/11616‑12086 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |