| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 8,963 | G→T | L242L (CTG→CTT) | talB → | transaldolase B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 8,963 | 0 | G | T | 83.3% | 54.8 / ‑2.3 | 24 | L242L (CTG→CTT) | talB | transaldolase B |
| Reads supporting (aligned to +/- strand): ref base G (1/3); new base T (10/10); total (11/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
CCTTCGCTCAGGCTCGTGCTTGTGCGGAAGCGGGCGTGTTCCTGATCTCGCCGTTTGTTGGCCGTATTCTTGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTGACCATCGCACCGGCACTGCTGAAAGAGCTGGCGGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGGCAGCACAACCAGGATCCAATGGCAGTAGATAAACTGGCGGAAGGTATCCGTAAGTTTGCTATTGACCAGGAAAAACTGGAAAAAATGATCGGCGATCTGCTGTAATCATTCTT > NC_000913/8716‑9199 | ccTTCGCTCAGGCGCGTGCTTGTGCGGAAGCGGGCGTGTTCCGGATCTCGCCGTTTGTTGGCCGTATGCTTGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCAGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTGAcc < 2:150335/251‑1 (MQ=255) cTCGTGCTTGTGCGGAAGCGGGCGTGTTCCTGATCTCGCCGTTTGTTGGCCGTATTCTTGACTGGTACAAAGCGACTACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAACTTCTGGAACTGGCAGGATGCG‑ACCGTCTTACCATCGCAcctac > 1:160549/1‑247 (MQ=255) ccTGATCTCGCCGTTTGTTGGCCGTATTCTTGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGCGCTGGCTGAGAGCGa > 1:323583/1‑249 (MQ=255) ccatggttgGCCGTATTCTTTACTGGTACAAAGCGAATACCGATAAGAA‑AGAATAAGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATATGAAATCTACCAGTACTACAAAAAGCCCGGTTATGAACCCGTGGTTATGGGCGAAAGCTTCCTTAACATCGGCGAAATTCTGGAAATGGCATACTGAGTACTG‑CTGACCATAGCACATACACTGCGGAAAGAGATGGCAGAGGGCGAAGGGACTATCGa > 2:205765/6‑250 (MQ=255) ggttgttgGCCGTATGCTTGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGagag < 2:273625/232‑1 (MQ=255) gTTTGTTGGCCGTATTCTTGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGagag > 1:273625/1‑234 (MQ=255) aTTCTTGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTa < 1:259226/251‑1 (MQ=255) aTTCGTGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTa < 1:236379/251‑1 (MQ=255) gagggttggaaaaaGCGATTAGCGATA‑GAACAGAGTGCGCGCGGGCAGAAGAGGCGGGCGTGGTTTCTGTAGCTGAAACGTACTAGTACACCAAAGAGCGGGGGTATGAAACGGGGGTTTTGGGGGCAAGCTGCGGTAAAAGCGGCGAAATTCGGGAACTGGCAGGCTGCG‑GCCGTCTGTGCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACAcc < 2:259904/240‑1 (MQ=255) tGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACAcc < 1:267408/250‑1 (MQ=255) aTAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGgcg > 1:328906/1‑251 (MQ=255) agTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACt < 1:65202/251‑1 (MQ=255) gaagaTCCGGGCGTGGTTTCTGTATCTGAAATCTAACAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCt > 1:215528/1‑251 (MQ=255) gaTCCGGGCGAGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAAAATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCtgtg > 1:98382/1‑251 (MQ=255) tctttATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGACATGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGGCAGCACAACCAgg < 2:66311/246‑1 (MQ=255) tcccAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGGGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTGACCATCGCACCGGCACTGCTGAAAGAGCTGGCGGAGAGCGAAGGGGCTATCGAACGTAAACTGTATTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGGCAGCACAACCAGGCTCCAATGGCAGTAg < 1:139893/248‑1 (MQ=255) ctacAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGGCAGCACAACCAGGATCCAATGGCAGTAGATAAACTgg > 1:59470/1‑251 (MQ=255) ggTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGGCAGCACAACCAGGATCCAATGGCAGTAGATAAACTGGCGGAAGGTATCCGTAAGTTTGCTATTg < 1:107483/251‑1 (MQ=255) ggCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGGCAGCACAACCAGGATCCAATGGCAGTAGATAAACTGGCGGAAGGTATCCGTAAGTTTGCTATTGACCAgg > 1:102706/1‑250 (MQ=255) ttCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGCCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGGCAGCACAACCAGGATCCAATGGCAGTAGATAAACTGGCGGAAGGTATCCGTAAGTTTGCTATTGACCAGGAAAAACTgg > 1:164022/1‑250 (MQ=255) ggaatatatgagAAATTTTGGAACTGGCGGGTTGCG‑ACAGTATTGCCAGCGCACCTACACGGCTGAAAGAGGTGGCTGAGAGCGAAGGGGCTATCTAACGTAACCTGTCTTACACCGGCGAAGTGAAAGCTCGTCCGGCTGGTATCGCTGAGTCCGAGTTCCGGTGGCAGCCCAACCATGATCCAATGGCAGTAGAAAATGTGGCGGAAGGTATCCGTAAGTTTGCTATTGACCAGGAAAAACGGGaaaaa < 2:149523/240‑1 (MQ=255) aGGCTGCG‑ACCGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGCGTTCCTGTGGAAGCACAACCAGGATCCAATGGCAGTAGATAAACTGGCGGAAGGTATCCGTAAGTTTGCTGTTGACCAAGAAAAACGGGAAAAAAAGAACGGCGATTCGCTGTAATCATTCt > 2:96581/1‑251 (MQ=255) ggCTGCG‑ACAGTCTTACCATCACACCTACACTGCTGAAAGAGCTGGCTGAGGGCGAAGGGGCTATCGAACGTAAACTGTCTTACTCCGGCGAAGTTAAAGCGCGTCCGGCGCTTATCAATGGGTCCGAGTGTCTGTTGCAGCTCAATCAGTATCCAATGGCAGTAGATAAACTGGCGGAAGGTATCCGTAAGTTTGCTATTGACCAGGAAAAACTGGAAAAAATGATCGGCGATCTGCTGTAATCATTCtt < 2:121953/251‑1 (MQ=255) ccGTCTTACCATCGCACCTACACTGCTGAAAGAGCTGGCTGAGAGCGAAGGGGCTATCGAACGTAAACTGGCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGgc < 1:218594/131‑1 (MQ=255) | CCTTCGCTCAGGCTCGTGCTTGTGCGGAAGCGGGCGTGTTCCTGATCTCGCCGTTTGTTGGCCGTATTCTTGACTGGTACAAAGCGAATACCGATAAGAA‑AGAGTACGCTCCGGCAGAAGATCCGGGCGTGGTTTCTGTATCTGAAATCTACCAGTACTACAAAGAGCACGGTTATGAAACCGTGGTTATGGGCGCAAGCTTCCGTAACATCGGCGAAATTCTGGAACTGGCAGGCTGCG‑ACCGTCTGACCATCGCACCGGCACTGCTGAAAGAGCTGGCGGAGAGCGAAGGGGCTATCGAACGTAAACTGTCTTACACCGGCGAAGTGAAAGCGCGTCCGGCGCGTATCACTGAGTCCGAGTTCCTGTGGCAGCACAACCAGGATCCAATGGCAGTAGATAAACTGGCGGAAGGTATCCGTAAGTTTGCTATTGACCAGGAAAAACTGGAAAAAATGATCGGCGATCTGCTGTAATCATTCTT > NC_000913/8716‑9199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |