| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,509,487 | 0 | A | G | 35.2% | 40.9 / 41.6 | 54 | pseudogene (9/315 nt) | insO | IS911B regulator fragment |
| Reads supporting (aligned to +/- strand): ref base A (16/19); new base G (8/11); total (24/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.55e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCAATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGCAATAACGGACTATATCGTTGGATATTACAGCGCACTAAGACCGCACGAATATAATGGT > NC_000913/4509251‑4509724 | cTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATAc > 1:88809/1‑251 (MQ=255) aaaGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAgcagg < 1:275308/251‑1 (MQ=255) gaggcagttctccttgaacggtcaaaaTCAGGGGTGGTGCTGTGATGTGACCTAAATCTGTACGGGTAAGCGCGGGGCGTTCCTCGCCGTTGTTCTCGACCTGTTGGAAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATATTCCA‑A‑G‑CGATGAAGGCAGTCATTATACGAgcaggca < 2:289035/227‑1 (MQ=255) aGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAgcaggcag < 1:27328/251‑1 (MQ=255) ggCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGt > 1:370741/1‑251 (MQ=255) cGCCGTGTCCGAGCCAAATCAGGTGTGGTGCGGTGATGTGCCCTATATCTGGACGGGGAAGCGCTGGGCGTACCGCGCCGCTGTTCTCGACCGGTTCGCAAGAAAACCAGTGGGCTGGGCCAAGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCgg < 2:303617/250‑1 (MQ=255) ccGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTc < 1:72662/239‑1 (MQ=255) ccGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGAGATGTTCCA‑CCG‑CGATCAGGGCAGTCAGTATACGGGCAGGCAGTTCCgaacgggaggg > 2:72662/1‑241 (MQ=255) gAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTgg < 1:83205/251‑1 (MQ=255) aaTCAGGTGTGGTGCGGTGATGTGACCTATATCTTGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACATCAGGCTTACCATGAAAGCACTGGCAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGTTCAAGGCAGTCATTATACGGGACGCCGGTTCCGGCAGTTACTTTGTCGATAc > 2:262799/1‑251 (MQ=255) aaTCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGAGCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATa < 1:174219/251‑1 (MQ=255) aTCAGGTGTGGTGTGGTGATGTGACCTATATCGGGACGGGCAAGCGCTGGGCGTGCCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGTGCTGGGCCATGTCGTCCCCGCCGGCCAGCAGGCTCACCATGAAATCGCTGGAAATGGCATGGGAACCCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATAc < 1:201348/251‑1 (MQ=255) cAGGTGTGGTGCGGTGATGTGACCTATTTCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATAcca < 1:181721/251‑2 (MQ=255) cAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATAcc < 1:286203/250‑1 (MQ=255) gtggtgCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATc < 1:190599/250‑1 (MQ=255) cGGTGATGTTTCCTATATCTGGACTGGTAAGCGCTGGGCGTACCTCGTCTTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCagag < 1:184205/251‑1 (MQ=255) gTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGt > 1:224652/1‑250 (MQ=255) gATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTAt < 1:107043/250‑1 (MQ=255) aCCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCgg < 1:338709/251‑1 (MQ=255) atatCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACTTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGTATGAGCCGGc < 1:73252/249‑1 (MQ=255) tatCGGGACGGGTAAGCGCTTGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAgcaggca < 1:111878/197‑1 (MQ=255) tgggcGGGTAAGCGCTGGGCGTACCTCGACGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCCTGAAAGCACTGGAAATGGCATGGGAACCCCGTGGCAAGCCCGTCGGGGTGATGTTCAA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACGGTGGCGA‑ACCAGGTACAGGCAGCGTATGAGTCTGCGGGGAAAc > 2:94237/5‑251 (MQ=255) tAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTCTTGTGGCGCTACC‑AGATCAGACAACGTATGAGCCGGCGCGGGAACTGCTggg > 1:356338/1‑251 (MQ=255) aaGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGa < 1:308051/251‑1 (MQ=255) cTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAActg < 1:362657/239‑1 (MQ=255) cTGGGAGTACCTCGCCGTTGTTCTCGACCTGTTAGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAACGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGAGCAGGCAGAGGATGAGTCTGCGTGGAAActg > 2:362657/1‑239 (MQ=255) gACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAgg > 1:287970/1‑250 (MQ=255) aaaCCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATgg < 1:224272/251‑1 (MQ=255) aaaCCAGGGGGCTGGGCCATGGCGTTCTCGACGGACAGCAGGCTTACTATGAAAGCACTGGAAATGGCATGGGAAACCCGGTGTTAGCCCGTCTGGGGGATGTTCCA‑A‑G‑CGATCGAGGCAGTCATTATACGAGCAGGCATTTCCGGCAGTTACTGTGGCTATACC‑GGATCATGCAGAGGATGAGTCGGCGTGGAAACTGCTGGGATCACAG‑CCTCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATgg < 2:370741/251‑1 (MQ=255) gTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCAGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTTCGGCAGTTACTGTGGCGATACC‑GGCTCCGGCAGAGTATGAGTCGGCGGGGGAACTGCTGGGATCACCG‑CCCCATGGAGCGCTTTTTCCGGAGTCTGAAGACCGAATGGGTGCCAG‑CGCCGGGCTAttta > 2:105751/1‑246 (MQ=255) gACAGCAGGCTTACCATGACAGAACTGGAAATGGCATGGGAAACCCGTGGTAAGCACGTCGGGGTGATGTTACA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGATCCGGCAGTTACTTTGGCGATACA‑GGATAAGGAAGTGTAAGGGTCGGAGTGGGAACTGCTGGGATAACAGACCCAA‑GGAGAGCTTCTTAAGGAGTAAGAAGAAAGAATGGGTGCCAG‑CGACGGGcatttgaagctgacgcg > 2:291253/1‑233 (MQ=255) gACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGAt < 1:262799/251‑1 (MQ=255) aCAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAG‑CCCAATGGCACGCTTCTTCCGGAGTCTGAAGAACGAATGGATGCCGG‑TGGTGGGTTACGTAAGCTTCAGCg > 1:364391/1‑249 (MQ=255) agcagGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTAATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAAAGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑c > 1:245482/1‑250 (MQ=255) ccATGCAAGCACTGGAAATGGAATGGGAACCCCGTAGTACGCCCGACGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCCGTCATTATACGAGAAGGCAGTTACGGCAGATACTGTGGCGGAACC‑GGCTCAGGCAGAGGATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCAAATGGAGCGCTTCTTCAGGAGTGTGAAGAACGATTGGGAGCCAG‑CGACGGGCTATGTAAGATTCAGCGATG‑CAGcgcatgaa > 2:20462/1‑243 (MQ=255) aaTGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGAATGAGCCGGCGCGGAAACTGCTGGGATAACAG‑CCCAATGGAACGCTTCTTCAGGAGTCTGAAGAAAGAATGGATGCCGG‑TGGTGGGTTACGTAAGCTTCAGCGAGG‑CAGCTCACGCCCTAACGGACTATATCg > 1:360122/1‑251 (MQ=255) aTGGCATGGGAAACCCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAG‑CCCAATGGAACGCTTCTTCAGGAGTCTGAAGAACGAATGGATGCCGG‑TGGTGGGTTACGTAAGCTTCAGCGAGG‑CAGCTCACGCCATAACGGGCTATATCGt > 1:285540/1‑251 (MQ=255) ggCATGGGAAACCCGTGGTAATCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGAAATAACGGACTATATCGtta < 2:88809/250‑2 (MQ=255) ggCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCAATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCATGCAATAACGGACTATATCGTTgg < 1:20462/251‑1 (MQ=255) gCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CCATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGCAATAACGGACTATATCGTTGGa < 1:79447/251‑1 (MQ=255) cATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCAGGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGCAATAACGGACTATATCGTTGGat < 1:348918/251‑1 (MQ=255) aTGGTAAACCCGCGGTAATCACGTCGTGGTGATGTTCCA‑A‑T‑GTATTAAGGCAGTCATTATACGAACAGGTAGTTCCGGCAGTTAATGTGGCGATACC‑GGATCAGGCAGAGTAGGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CTCCATGGAGCGCTGCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGTCTATGTAAGCTTAAGCGATG‑CAGCTCACGCAAGAACGGACTATATCGTTTGata < 2:113433/251‑1 (MQ=255) tggAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GAATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGGTAACCG‑CCCCATGGGGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGGTACAG‑CGCCGGGCTATGTAAGATTCCGCGATGACA‑CTCACGCAATATCGGACTATACCGTTGTATAtt > 2:223629/2‑251 (MQ=255) ggAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACAAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCAATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGCAATAACGGACTATATCGTTGGATAtt > 1:234765/1‑250 (MQ=255) gAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGcttctt < 2:326225/157‑1 (MQ=255) gAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGcttctt > 1:326225/1‑157 (MQ=255) cccggtttAAGCCCGTGGGGTTGATTGTCCA‑C‑GGCGATCAGGGCTGTCATTATACGTGAAGGCAGTTCCGGCAGTTGTTGTTGCGATACC‑AGATCAGACAGAGTATGAGGCGGCGCGGAATCTGTGGGGATAACAG‑CCCAATGGAACGCGTCTTCAGGAGTCTGAAGAACTAATGGAGGCCGG‑TGGTGGGTTACTTAAGCTACACCGAGG‑CAGCTCTCGCCATAACGGACTATATCGTTGGATATTACAgc < 2:364126/244‑1 (MQ=255) gTGGTAAGCCCGGCGGGGTGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAG‑CCCAATGGAACGCTTCTTCAGGAGTCTGAAGAACGAATGGATGCCGG‑TGGTGGGTTACGTAAGCTTCAGCGAGG‑CAGCTCACGCCATAACGGACTATATCGTTGGATATTACAgcgcc > 1:827/1‑250 (MQ=255) gTAAGCCCGGCGGGGGGATGTTCCACA‑G‑CGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATCCC‑AGATCAGAAAGAGTATGAGCCGGCGAGGAAACTGCTGGGATAACAG‑CCCAATGGAACCCTTATTCAGGAGTCTGAAGAAAGAATGGATGCCGG‑GGGGGGGTTAGGTAAACTTTAGCGAGG‑CAGCTCACGCCCACACGGGCTATAACGTTGGGTATTAAAGCGCaat > 2:302225/1‑248 (MQ=255) gTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAA‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGCAATAACGGACTATATCGTTGGATATTACAGCGCACTAAGACCGCAc > 1:67074/1‑251 (MQ=255) cGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGCAATAACGGACTATATCGTTGGATATTACAGCGCACTAAGACCGCACg < 1:250639/250‑1 (MQ=255) ggggTGATGT‑CCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGAAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGCAATAACGGACTATATCGTTGGATATTACAGCGCACTAAGACCGCACGaa > 1:341130/1‑250 (MQ=255) aggttgcA‑A‑G‑CGATCAAGGCATTCATTATACGAGCAGGAAGTTCCGGCAGTTACTGGGGTGACACC‑GGAGCAGGCAGAGTATGAGTCGGCGTGGAAACTGCGGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGTAGTCTGAAGAACGCATGGGTGTCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCATGCAATAACGGACTATATCGTTGGATATTACAGCGCACTAAGACCGTACGAATATAAt < 2:192224/245‑1 (MQ=255) tccaca‑G‑CGATAAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTCCTGTGGCGATACC‑AGATCAGAACGAGTATGAGCCGGCGCGGAAACTGCAGGGATAACAG‑CCCCATGGAACACTTCTTCAGGCGTCTGAAGAACGACTGGATGCCGGACG‑GGGGTTACGTCAGCTTCAGCGAGG‑CAGCTCACGCAATAACGTCCTATATCGATGGATATTACCGCGCACTAAAACCGCACGAAcatatcggt > 2:154406/6‑246 (MQ=255) | CTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑G‑CGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCAATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAG‑CGACGGGCTATGTAAGCTTCAGCGATG‑CAGCTCACGCAATAACGGACTATATCGTTGGATATTACAGCGCACTAAGACCGCACGAATATAATGGT > NC_000913/4509251‑4509724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |