| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,509,416 | 0 | T | C | 36.2% | 36.9 / 47.9 | 58 | pseudogene (408/471 nt) | insO | IS911B regulator fragment |
| Reads supporting (aligned to +/- strand): ref base T (19/18); new base C (6/15); total (25/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.04e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGAAAGAGCTGGGGCTGGTCAGCTGTCAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCAATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAGCGACGGGCTATGTAAGCTTCAGCGATGC > NC_000913/4509169‑4509657 | tGAAAGAGCTGGGGCTGGTCAGCTGTCAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTAcc > 1:192224/1‑251 (MQ=255) gAAAGAGCTGGGGCTGGTCAGCTGTCAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTCGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGCGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGAACTGTTCGCCAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTAcc > 1:373965/1‑250 (MQ=255) gAAAGAGCTGGGGCTGGTCAGCTGTCAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATATTGCTATCCCTAACTACCTTGAAAGGCAGTTCTCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCAGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTAcc > 1:171136/1‑250 (MQ=255) aaaGAGCTGGGGCTGGTCAGCTGTCAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCAt < 1:353397/251‑1 (MQ=255) ggcgggggCTGGTCAGCTTACAGCAGCCGACTCACCGGTATAAACGTGGTGGTCAGGAACATGTTGCTATCCCTACCGACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGaaa < 2:196590/247‑1 (MQ=39) tGGTCAGCTGTCAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGa > 1:364126/1‑250 (MQ=255) tcagctatcagaaaacGACTCACCGGTATAAACGTGGAGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGACGTGACCGAGACAAATCAGGTGTGGTGCGGTGATGTGACCATTATCTGGAAGGGTAAGCGCTGGGCGTACCTCGCAGTTGTTCTCGACCTGTTCGAAAGAAAACCAGTGGGCTGGAACATGTCGTTATCGCAGGACAGAAGGCTTACCATGAAAGCACTGGACATg > 2:332403/16‑251 (MQ=255) agcCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTAGACCTGTTCACAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGTGCTGGAAGTGGCATGGGACAc‑c > 1:209604/1‑251 (MQ=39) cTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAGAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGt > 1:29403/1‑251 (MQ=255) cACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTaa < 1:278763/251‑1 (MQ=255) cccgttataaaattgtgggttattaaCATGTTGCTATCCTCAACTTCCGTGAAAGTCAGTCCGCCGTGACCGAGTCAAATCAGGTGTGGTGCGGTGATTTTACCTATATCTGGCCGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCTACCTGTTCGCAAGAAAACCAGTGGGCTGTGCCATGTCGTTCTCGCCGGACAGCAGGCATACCATGAAAGCCCTGTAAATGGCATGGGAACC‑CCGTGGTAAg < 2:234243/227‑1 (MQ=255) cccGGTATAAACGTGGGGTTCCTGAATATGGTCTTATCCCTATTTGCCTGGAAAGGCCGTTCGCCGTGGCCGACCCAAGTCTGGTGTGTTGCGGTGATTGGTCCTATATCGTGACTGTTAAGCGCTGGGCGTCCCTCGCCGTTGTTCTCGCCCTGTTCGCTAGAAAACCAGTGGGCTGGGCCATGTCGTTCTTGGCGGACAGCAGGCTTACCATTAAAGCACTTGAATTGGCATGGGAAAC‑CCGTTGTAAg < 2:209077/250‑1 (MQ=255) aCCGGTATACACGTGGTGGTCATGAACATGTTGCTTACCCTAACTGCCTGGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGGGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCGGGGCGTACCTCGCCGTTGTTCGCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAg < 2:119923/251‑1 (MQ=255) aCCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTa > 1:113433/1‑249 (MQ=255) ggTATAAACGTGGTGGTCATGAACTGGGTGCTAGCCCTAACTACCTTGAAAGTCAGGTCGCCGTGACCGAGCTAAATCAGTTGTGGTGCGGGGATGTGGCCTATAGCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGGTCGCAAGAAAACCAGTGGGCTGTGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGccc < 1:348478/251‑1 (MQ=255) ggTATAAACGAGGTGGTCATGACAATGTGGCACTCCCTAACGACCCTGAAAGGCAGTTCGGCGTGTCCGAGCAAAATCAGGGGTGGTGCGGTGATGAGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTGCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTTGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAATC‑CCGTGGTAAGccc < 2:80496/251‑1 (MQ=255) agaaaCTTGGTGGTCATGAACATGTTGCTATCCCTAACTGCCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCTCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTc < 1:343142/249‑1 (MQ=255) cGTGGTGGTCATGAACATGTTGATATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGAGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGAAAGAAAACCAGGGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGGGGTAAGCCCGTCggggg > 2:27328/1‑250 (MQ=255) cATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCa < 1:363034/251‑1 (MQ=255) tGAACATGTTGCTATCCCTAACTACCTTGAAAGGAAGTTCGCCGTGACCGAGCCAAATCAGGAGTGGCGCGGTGATGTGACCTATATCTGGCCGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTACTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGCAAGAACTGGCAAAGGCATGG‑AAACACCGTGGAAAGCCAGTCGGGGGGATGTTCCa > 2:338709/1‑249 (MQ=255) gTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCa > 1:107612/1‑250 (MQ=255) ttGCTATCCCTATCTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGGGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCa < 1:55255/250‑1 (MQ=255) cTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATAc > 1:88809/1‑251 (MQ=255) aaaGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAgcagg < 1:275308/251‑1 (MQ=255) gaggcagttctccttgaacggtcaaaaTCAGGGGTGGTGCTGTGATGTGACCTAAATCTGTACGGGTAAGCGCGGGGCGTTCCTCGCCGTTGTTCTCGACCTGTTGGAAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATATTCCA‑A‑GCGATGAAGGCAGTCATTATACGAgcaggca < 2:289035/227‑1 (MQ=255) aGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAgcaggcag < 1:27328/251‑1 (MQ=255) ggCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGt > 1:370741/1‑251 (MQ=255) cGCCGTGTCCGAGCCAAATCAGGTGTGGTGCGGTGATGTGCCCTATATCTGGACGGGGAAGCGCTGGGCGTACCGCGCCGCTGTTCTCGACCGGTTCGCAAGAAAACCAGTGGGCTGGGCCAAGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCgg < 2:303617/250‑1 (MQ=255) ccGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCg < 1:21217/189‑1 (MQ=255) ccGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAA‑CCGTGGTAAGCCCGTCg > 2:21217/1‑189 (MQ=255) ccGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTc < 1:72662/239‑1 (MQ=255) ccGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGAGATGTTCCA‑CCGCGATCAGGGCAGTCAGTATACGGGCAGGCAGTTCCgaacgggaggg > 2:72662/1‑241 (MQ=255) gAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTgg < 1:83205/251‑1 (MQ=255) aaTCAGGTGTGGTGCGGTGATGTGACCTATATCTTGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACATCAGGCTTACCATGAAAGCACTGGCAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGTTCAAGGCAGTCATTATACGGGACGCCGGTTCCGGCAGTTACTTTGTCGATAc > 2:262799/1‑251 (MQ=255) aaTCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGAGCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATa < 1:174219/251‑1 (MQ=255) aTCAGGTGTGGTGTGGTGATGTGACCTATATCGGGACGGGCAAGCGCTGGGCGTGCCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGTGCTGGGCCATGTCGTCCCCGCCGGCCAGCAGGCTCACCATGAAATCGCTGGAAATGGCATGGGAACC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATAc < 1:201348/251‑1 (MQ=255) cAGGTGTGGTGCGGTGATGTGACCTATTTCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATAcca < 1:181721/251‑2 (MQ=255) cAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATAcc < 1:286203/250‑1 (MQ=255) gtggtgCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATc < 1:190599/250‑1 (MQ=255) cGGTGATGTTTCCTATATCTGGACTGGTAAGCGCTGGGCGTACCTCGTCTTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCagag < 1:184205/251‑1 (MQ=255) gTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGt > 1:224652/1‑250 (MQ=255) gATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTAt < 1:107043/250‑1 (MQ=255) aCCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCgg < 1:338709/251‑1 (MQ=255) atatCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACTTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGTATGAGCCGGc < 1:73252/249‑1 (MQ=255) tatCGGGACGGGTAAGCGCTTGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAgcaggca < 1:111878/197‑1 (MQ=255) tgggcGGGTAAGCGCTGGGCGTACCTCGACGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCCTGAAAGCACTGGAAATGGCATGGGAACC‑CCGTGGCAAGCCCGTCGGGGTGATGTTCAA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACGGTGGCGA‑ACCAGGTACAGGCAGCGTATGAGTCTGCGGGGAAAc > 2:94237/5‑251 (MQ=255) tAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTCTTGTGGCGCTACC‑AGATCAGACAACGTATGAGCCGGCGCGGGAACTGCTggg > 1:356338/1‑251 (MQ=255) aaGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGa < 1:308051/251‑1 (MQ=255) cTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAActg < 1:362657/239‑1 (MQ=255) cTGGGAGTACCTCGCCGTTGTTCTCGACCTGTTAGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAACGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGAGCAGGCAGAGGATGAGTCTGCGTGGAAActg > 2:362657/1‑239 (MQ=255) gACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAgg > 1:287970/1‑250 (MQ=255) aaaCCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATgg < 1:224272/251‑1 (MQ=255) aaaCCAGGGGGCTGGGCCATGGCGTTCTCGACGGACAGCAGGCTTACTATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGGTGTTAGCCCGTCTGGGGGATGTTCCA‑A‑GCGATCGAGGCAGTCATTATACGAGCAGGCATTTCCGGCAGTTACTGTGGCTATACC‑GGATCATGCAGAGGATGAGTCGGCGTGGAAACTGCTGGGATCACAG‑CCTCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATgg < 2:370741/251‑1 (MQ=255) gTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CAGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTTCGGCAGTTACTGTGGCGATACC‑GGCTCCGGCAGAGTATGAGTCGGCGGGGGAACTGCTGGGATCACCG‑CCCCATGGAGCGCTTTTTCCGGAGTCTGAAGACCGAATGGGTGCCAGCGCCGGGCTAttta > 2:105751/1‑246 (MQ=255) gACAGCAGGCTTACCATGACAGAACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCACGTCGGGGTGATGTTACA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGATCCGGCAGTTACTTTGGCGATACA‑GGATAAGGAAGTGTAAGGGTCGGAGTGGGAACTGCTGGGATAACAGACCCAA‑GGAGAGCTTCTTAAGGAGTAAGAAGAAAGAATGGGTGCCAGCGACGGGcatttgaagctgacgcg > 2:291253/1‑233 (MQ=255) gACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAGCGACGGGCTATGTAAGCTTCAGCGAt < 1:262799/251‑1 (MQ=255) aCAGCAGGCTCACCATGAAAGCGCTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGGCGGGGTGATGTTCCACA‑GCGATCAGGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTATTGTGGCGATACC‑AGATCAGACAGAGTATGAGCCGGCGCGGAAACTGCTGGGATAACAG‑CCCAATGGCACGCTTCTTCCGGAGTCTGAAGAACGAATGGATGCCGGTGGTGGGTTACGTAAGCTTCAGCg > 1:364391/1‑249 (MQ=255) agcagGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTAATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCCATGGAGCGCTTCTTCAGGAGTCTGAAGAAAGAATGGGTGCCAGCGACGGGCTATGTAAGCTTCAGCGATGc > 1:245482/1‑250 (MQ=255) | TGAAAGAGCTGGGGCTGGTCAGCTGTCAGCAGCCGACTCACCGGTATAAACGTGGTGGTCATGAACATGTTGCTATCCCTAACTACCTTGAAAGGCAGTTCGCCGTGACCGAGCCAAATCAGGTGTGGTGCGGTGATGTGACCTATATCTGGACGGGTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTCGTTCTCGCCGGACAGCAGGCTTACCATGAAAGCACTGGAAATGGCATGGGAAAC‑CCGTGGTAAGCCCGTCGGGGTGATGTTCCA‑A‑GCGATCAAGGCAGTCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACC‑GGATCAGGCAGAGTATGAGTCGGCGTGGAAACTGCTGGGATAACAG‑CCCAATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCAGCGACGGGCTATGTAAGCTTCAGCGATGC > NC_000913/4509169‑4509657 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |