Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,037,496	0	A	T	36.6%	41.1 / 41.2	43	intergenic (+161/‑23)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base A (13/13);  new base T (6/9);  total (20/23)
Fisher's exact test for biased strand distribution p-value = 7.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.59e-01
Rejected as consensus: Frequency below/above cutoff threshold.

TGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAA‑CCGGCGATTTCCGA  >  NC_000913/4037254‑4037636                                                                                                                                                                                                                                                    |                                                                                                                                               ggTTATGGGGCTATAGCGCAGCTGGGAGAGCGCCTGCTTAGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCAGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAGCgtaagaaa                                                                                                                                          <  2:166865/248‑1 (MQ=255)    tATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCt                                                                                                                                     >  1:62449/1‑251 (MQ=37)       ggggCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATGGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCg                                                                                                                                  <  1:273111/251‑1 (MQ=37)               tgCTCAGCTTGGAGAGGTCCTGCTTTGCACTCAGGAGTTCTGAGTGTT‑GATCTCGCAGAGCTCATCAATCGCTGTAGTGAGTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGATCACTGCGAAGTGTTGATCGTGAAAAATCTGGATCAAGCTGAAAATTGTAACACGGAACAACGAAAGCTGTACGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGATACATCTTCGGGTtgt‑g                                                                                                                          <  2:282473/249‑1 (MQ=2)               aactcagcggggagtgagcatacTTTGCACGCAGGTGGAATGCG‑GTTCGGTCTCGCAGAACGCCACCCTCTCTGAAGTGATTCAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTAACTGCGAAGTTTTGATCTTTAAAACTCTGGATCAAGCTGTAAATTGCAACACTGAACACCGAAAGATGTTCGTGAGGCTCTCAAATTTGCGAAACACGATGTGGAATAGGAAGAAACATCTTCGGGTagt‑g                                                                                                                          >  2:9510/23‑250 (MQ=2)                   cAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGt                                                                                                                      <  1:40525/250‑1 (MQ=37)                               cgcCTGCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGc                                                                                                         <  1:328814/251‑1 (MQ=21)                                gcCTGCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGTCTAAGCg                                                                                                        <  2:18798/251‑1 (MQ=37)                                    gCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTac                                                                                                     <  1:199106/250‑1 (MQ=37)                                    gCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACAACTTCGAGTTGT‑GAGGGGAAGCGaagaagaggaa                                                                                                     <  1:268068/250‑11 (MQ=11)                                       ttGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACgg                                                                                                 >  1:115654/1‑251 (MQ=37)                                       ttGCACGCAGGAGGTATGCG‑GTCCGATCCCGCAAACCACCACCATATATGTAGCGATTACATAAAAAATACTTCATAGTGTACATGCAAAGGTACACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGACAATTGAAAAACTGAACAACGAAAATTGTTCGTGAGTCTCTAACATTTTCGCCACACGATGATGAATCGTAAGAAAAGTCCTCGGGTTGT‑GAGGTTAAGCGACTAAGAGTACACgg                                                                                                 >  2:157313/1‑251 (MQ=11)                                           cactccgtaggtctgtagatCGATCCCGCATAGCTCCTCCATCTCTGTAGTTATTAAATAAAAAATACTGCAGATTGTAACTGCAAAGGTTCACTGAGAAGTTTTGCTCTGTAAAAAGCGGGATCATGCTGAAAATTGAAACACTGAACAACTAAAGTTGTTCGAGAGTCTCTCAAATTTTCGCAACACGATGATGAAGTGTAAGAAGCGTCTTCGGGTTGT‑GAGTTTATGCGATTAAGCATACACGGttg                                                                                              <  2:217855/232‑3 (MQ=2)                                           aCGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTgg                                                                                              >  1:367545/1‑250 (MQ=37)                                            cGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAGAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGAt                                                                                            >  1:36662/1‑251 (MQ=21)                                            cGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGAt                                                                                            >  1:52746/1‑251 (MQ=37)                                                 taggTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGTAAATTGCAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTAGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGATTAAGCGACTAAGGGTACACGGTGAAGGCCCt                                                                                       >  2:79982/2‑251 (MQ=11)                                                  aggTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTg                                                                                      >  1:284171/1‑251 (MQ=37)                                                        gCG‑GTTCGGTCCCGCATAGCTCCGCCATCTCTGTAGGGATTAAATAAAAAATACTGCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTTGTGAGTCTCTCAAATGTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGTCATGGCAGt                                                                                 <  2:157262/250‑1 (MQ=11)                                                          g‑gTTCTATCCCGCATAGCTCCACCATCACTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCag                                                                              <  1:206384/251‑1 (MQ=21)                                                          g‑gTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTc                                                                                >  1:342217/1‑249 (MQ=25)                                                            gTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGATTCTCTCAAATTTTCGCAACACGATGACGAATCGTAAGAAACATCCTCGGGTTGT‑GATGTTAAGCGCCTAATCGTCCACGGTGGATGCCCTGGCAGTCaga                                                                             <  1:134146/251‑1 (MQ=11)                                                                    ccGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATg                                                                      >  1:383003/1‑250 (MQ=37)                                                                        aTAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAgg                                                                  >  1:17412/1‑250 (MQ=37)                                                                          aGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACg                                                               >  1:188950/1‑251 (MQ=21)                                                                              ccaccaTATCTGTAGTGATTAAAGAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGATGTTCGTGAGTCTCGCAAATTTTCGCAACACGATGATGAATCGGAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTg                                                             <  2:101722/249‑1 (MQ=255)                                                                                        tGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGAt                                                 >  1:37266/1‑251 (MQ=21)                                                                                         gTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCGTTAGAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGATGCGATGAAGGACGTGCTAATCTGCGAt                                                 <  2:36662/250‑1 (MQ=255)                                                                                          tagagATTAAATAAAAAATACTTCAGAGTGTAACTGCAAAGGTTCACTGCGAAGATTTGCTCTTTAAAAATCTGGATCAAGCTGACAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCACTGGAAGTCAGAGGCGATGAAGGACGTGCTAATCTGAGATa                                                >  1:65497/5‑250 (MQ=11)                                                                                          tAGTGATTAAATAAAAAATACTTCATAGTGTACCTGCAAAGGTTCACAGCGAAGTTTTGCGCTTTAAAAATCTGGATCAAGCTGAAAAGTGAAACACTGAACAACGAAAGTTGTACGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATTAAGGACGTGCTAATCTGCGATa                                                <  2:79018/250‑1 (MQ=255)                                                                                           aGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGATTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCTGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAg                                              <  2:135802/251‑1 (MQ=37)                                                                                            gTGATTAAACAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGCTGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGATAATCTGCGAAAAGc                                             >  2:241061/1‑251 (MQ=255)                                                                                              gATTAAATAAAAAATACTTCAGATTGTACCTGCAACGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACGCGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCg                                            <  2:313603/250‑1 (MQ=255)                                                                                                 taaataaaAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTATGCGACTAAGCGTACACGGTGGATGACCTGGCAGTCAGAGGCTATGAAGGACGGGCTAATCTTCGATAAGCATCgg                                        >  2:6899/1‑251 (MQ=11)                                                                                                      aaaaaattattaagatgttgccTGCAAAGGTTCACTGCGAAGGTTTGCCCGATAAAAAGCTGGCTCAAGCTGAAAATTGAAACACTGAACAAAGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACCCGATGATGTATCGAAAGAAACATCGTCGG‑TTGTTGAGGTTAAGCGACTAATCGTACACGGTGGATTCCCGGGCAGTCATAGGCGATGAAGGACGGGCTAATCAGCGATAAGCGTCGGTAAgg                                   <  2:372148/231‑1 (MQ=11)                                                                                                          aaTACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGat                               <  1:208375/251‑1 (MQ=34)                                                                                                             aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGatat                             <  1:6899/250‑1 (MQ=25)                                                                                                                tCAGAGTGTACCATCAAAGGTTCACTGAGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTAAAATTTTCGCAACACGTTGATGAAGCGAAAGAAATATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGTGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGTTGATATGaa                          <  2:238732/250‑1 (MQ=11)                                                                                                                   gagTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTAGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGAGGATGCCCTGGCAGTCAGAGGCGCTGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGaaacgg                      >  1:1898/1‑247 (MQ=255)                                                                                                                    agTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGtt                     <  1:163568/251‑1 (MQ=34)                                                                                                                       gtACCTGCAAAGGGTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTtata                  <  1:278971/251‑1 (MQ=18)                                                                                                                                aaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTaca                                                                                                    >  2:31198/1‑160 (MQ=38)                                                                                                                                aaGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTaca                                                                                                    <  1:31198/160‑1 (MQ=38)                                                                                                                                       aCTGCGAAGATTTGCTCTTTAACAATCTGGATCAAGCTGAAAATTGACACACTAAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGAGGAAGCCCTGGCATTCAGAGGCGATGAAGGACGTGATAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGT‑ATAAACCGGCGCTTTCCgc  >  2:162768/1‑249 (MQ=11)                                                                                                                                                                                                                                                    |                                                                                                                                               TGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCG‑GTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGT‑GAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAACCGTTATAA‑CCGGCGATTTCCGA  >  NC_000913/4037254‑4037636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑