Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1411925	1418432	6508	13 [0]	[3] 4	[ttcA]–[kilS]	[ttcA],intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,[kilS]

ACTCGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCA  >  NC_000913/1411675‑1412146                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                               tatcaggCAGAACGTGTGCCGGGAATCCCGGTTGCTTTTGATCGAGGTTAACAGCAACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAATCCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTCCGACTCAGACTTTTTTGTAATTTGTTCAGGTGGTATTGTtctttctt                                                                                                                                                                                                                                <  1:41913/245‑1 (MQ=255)                  tCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgatttt                                                                                                                                                                                                               <  1:187169‑M1/250‑18 (MQ=255)                      ggAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgac                                                                                                                                                                                                          >  1:286030‑M1/1‑229 (MQ=255)                                                             gcaaaaaattgATTTGCGCGCTTTGATGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaaga                                                                                                                                                                   <  2:286030‑M1/248‑62 (MQ=255)                                                                      tgattgGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCAGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGTAGTCAGCAATTGCTTCGCCCACGTTACGACGCAACCGTTTTTGTAATTTTTTCAGGTTGTCTTGTTCTTTCTTactactttcttgattttgcgacatttaaaatcgactcaattcgttatatggcatcagaagtttatccttc                                                                                                                                                          >  2:7347‑M1/1‑181 (MQ=255)                                                                                  ccgatcgcaaattgCGAAGAATCTCCAGCATGGTATAGCTGTCTTTCCCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTaataattgcttgattttgtgacatttaaaagcgactcaattcgttatatggcatcagaagagtattcgtcaggccggaacg                                                                                                                                               <  2:227916‑M1/244‑82 (MQ=255)                                                                                         cAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagacgagtatgcgtcatgccggaccg                                                                                                                                               >  1:227916‑M1/1‑162 (MQ=255)                                                                                                   aGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctg                                                                                                                             <  2:287974‑M1/251‑100 (MQ=255)                                                                                                                 ggTATAGCTGTCTTTACCCTCGGAGAGGCAAACCATTATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttctttattttgcgacatttaaaagcgactcgattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatcttatataaaaaactg                                                                                                                <  1:358653‑M1/250‑113 (MQ=255)                                                                                                                                                   atgatgCGTTCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagaggggaaaatgtc                                                                             <  1:211611‑M1/251‑148 (MQ=255)                                                                                                                                                                        aTCATATTTAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCATGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccatcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagaggggaaaatgtcagcacatttgcgaaatgaatc                                                        <  1:267254‑M1/251‑169 (MQ=255)                                                                                                                                                                                                     cACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccgggacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagaggggaaaatgtcagcacatttgcgaaatgaatcaaaaagaccgcagcaatgtgcgggcgtt                            >  1:36045‑M1/1‑54 (MQ=255)                                                                                                                                                                                                                              aaTTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatgggacgggttagaggggaaaatgtcagcacatttgcgaaattaatcaaaaaacccgcagcaatgtgcgggcggtagtgtcagcgcaccaccagcacgggg  >  1:244834‑M1/1‑29 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                               ACTCGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCA  >  NC_000913/1411675‑1412146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑