| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4498181 | 1 (0.030) | 9 (0.320) | 8/476 | 1.5 | 72.1% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 4499518 = | 6 (0.210) | intergenic (+18/‑1742) | insD6/yjgZ | IS2 insertion element protein InsB/uncharacterized protein YjgZ | |||||
GGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAA > NC_000913/4499268‑4499728 | aaacagtaatcatcccgggcaaatgcccgggaattattctaggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagaaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtacggagtgctgcagggatttgatggtcccttgtg > 1:352241‑M2/251‑251 (MQ=255) gTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACtt > 1:206072/1‑251 (MQ=255) aaaGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAg < 1:195751/251‑1 (MQ=255) aaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGt < 1:183711‑M2/62‑1 (MQ=255) cggtattaactgatgtatttactatttaccgctcactgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagagtgatgcgggataactgacgtaaggagtgctgctgggatttgatggtcccttgtGCTGTTATGAATACGAATATTTTATACAGCATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCatat > 1:148‑M2/181‑251 (MQ=255) aaaaGAACCTTGCAGAGGGGTTCGAGCATTAAAACGAATGGCAGCCGCAGAGTGCGTGGGGTTATCGAGCGGCAGGGGAATATCTGCGGAAGGAGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAAGGGCAAATCCACCGTGTGCTGATATGAAAACAGATATTTTATACAGAATACTATGCAGTACAAGCGACTGTAATACCGTCTGCCCTATAAGATTACCTGTGATCAGGAAGAATa < 2:94203/250‑1 (MQ=18) cgctccctgcaggatggattatcagaatcagcggttattcattatttatatccattcaataaaaaagtaacctcataaaaagtcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtccattgtGCTGATATGAATACGGATATTTTATACAGCATACTTTTCAGAACAAGCGACTGTATTACAGTCTGCCATCAATGATTACCGGTGATCAGGAAGTATAagg > 2:281019‑M2/152‑250 (MQ=255) cccttcagtggtgattaccaatatccgcggttattcattatttatacacattcaataaaaaagtaacctcaaaaaaaatcctgtactcccagggttatgcgtgataactgacttaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTTCCTGTGATCAGGAAGAATTAGTgg < 2:269781‑M2/102‑1 (MQ=255) caggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGt < 1:347078‑M2/109‑1 (MQ=255) aGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATATGGGCAAATCCTGCTTGTGCAGATATGAATACGGATATTTAATACAGAATa < 2:44730/163‑1 (MQ=14) aGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATa > 1:44730/1‑163 (MQ=255) atacagtcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTTCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTaaaaa < 1:183119‑M2/149‑1 (MQ=255) gCGGCAGCGGGTTTGTAATGGGTTAAGTGATAACAGATGGTTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGAAATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCGCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCg < 2:206072/251‑1 (MQ=255) ctcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACCGGATAGTTATCTTCGTCTGTCCGCGGATTGa > 2:183872‑M2/63‑250 (MQ=255) gacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACaa < 1:353643‑M2/211‑1 (MQ=255) | GGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAA > NC_000913/4499268‑4499728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |