New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3584195	NA (NA)	29 (0.990)	27/488	0.2	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	4250983 =	0 (0.000)					intergenic (+509/‑1523)	malM/ubiC	maltose regulon periplasmic protein/chorismate lyase

TTTGATGAAACATGATGTGGTGCAAGGAAATAATATAGTAGATCTTGATTTACTACGTAATTTAAATGGGGTGCCAGGTTTAAACAGAGATAACTTTATTTATATCAGCAATATTTTTTCAAATATAAAACAACGGAACGAAAAAATCATGCAATAAATATGTTTCGTGAAGTCTCAATCAGTAATGATACTATAAGTGTAAAATTCTACAGAAATGAAAAAAATTGAATGCGCTTGCAATTTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAATGTAAAGAAATTGGGGATTGCAATTTTACTACTGCAATAGTTGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTCG  >  NC_000913/4250741‑4251225                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   ttgacgtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGAt                                                                                                                                                                                                                                              <  1:217764‑M2/7‑1 (MQ=255)   gacgtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGAt                                                                                                                                                                                                                                          <  1:332125‑M2/11‑1 (MQ=255)           gatatggatgacggacggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATg                                                                                                                                                                                                                                   <  1:102744‑M2/18‑1 (MQ=255)                     acggatggctggccgcggtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTGCTGATGGATAAAGATGCGCAGGGGtat                                                                                                                                                                                                                        <  1:149526‑M2/29‑1 (MQ=255)                                          gaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGa                                                                                                                                                                                                    <  1:150357‑M2/49‑1 (MQ=255)                                                             agctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTa                                                                                                                                                                                <  1:200596‑M2/69‑1 (MQ=255)                                                                  aacgtaatcagtaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgtgacggaagtcgctgtcgttctcaaaatcggtggatctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATTCGCAGGGGTATATCGACCTGTCTGATTTGTATTTAACAAGTTGTCATTTTAAAGGt                                                                                                                                                                           <  2:296634‑M2/74‑1 (MQ=255)                                                                                  gatataagcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTGGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATCTCGTAgg                                                                                                                                                           >  2:316638‑M2/162‑251 (MQ=255)                                                                                           cgcgaattgagcggcataacctgaatctgaggcagcaccgggcacgtgtgggacggaagtcggtgtctttcgcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcatttccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGAGTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCttttt                                                                                                                                                  <  2:136084‑M2/99‑1 (MQ=255)                                                                                               aattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgccaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGAAAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCAtttt                                                                                                                                                                                 >  2:3034‑M2/149‑216 (MQ=255)                                                                                               aattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCAtttt                                                                                                                                                                                 <  1:3034‑M2/68‑1 (MQ=255)                                                                                                                 gaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACAt                                                                                                                              <  1:23867‑M2/119‑1 (MQ=255)                                                                                                                 gaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGt                                                                                                                            <  1:23508‑M2/121‑1 (MQ=255)                                                                                                                       gaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACAtt                                                                                                                      <  1:120058‑M2/127‑1 (MQ=255)                                                                                                                           cagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGa                                                                                                                   >  1:354444‑M2/121‑250 (MQ=255)                                                                                                                            agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTc                                                                                                                                                                                                                                                  >  1:35516‑M2/120‑122 (MQ=255)                                                                                                                            agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAAt                                                                                                                 >  1:197693‑M2/120‑251 (MQ=255)                                                                                                                            agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAAt                                                                                                                 <  1:381364‑M2/132‑1 (MQ=255)                                                                                                                              cacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAATGt                                                                                                               <  1:169520‑M2/134‑1 (MQ=255)                                                                                                                               acctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGa                                                                                                                                                                                                                                               >  2:140534‑M2/117‑122 (MQ=255)                                                                                                                               acctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGa                                                                                                                                                                                                                                               <  1:140534‑M2/6‑1 (MQ=255)                                                                                                                                                                                gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCttttt                                                                                                                                                  >  1:195989‑M2/68‑166 (MQ=255)                                                                                                                                                                                gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGAGTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCttttt                                                                                                                                                  <  2:195989‑M2/99‑1 (MQ=255)                                                                                                                                                                                            agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAATGTAAAGAAATTGGGGATTGCAATTTTACTACTGCAATAGTTGATAATGTCATATTTAGATGTCg                                                 >  1:88492‑M2/56‑251 (MQ=255)                                                                                                                                                                                                   gggcattatctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAATGTAAAGAAATTGGGGATTGCAATTTTACTACTGCAATAGTTGATAATGTCATATTTAGATGTCGACGttt                                           >  1:305021‑M2/49‑250 (MQ=255)                                                                                                                                                                                                       attatctgaacataaaacactatcaatacgatggagtcattaacTTCTGATGGATAAAGATGCGCAGGGGTATATCGCCCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAATGTAAAGAAATTGGGGATTGCAATTTTACTACTGCAATAGTTGATAATGTCATATTTAGATGTCGACGTTTacac                                       >  1:294002‑M2/45‑250 (MQ=255)                                                                                                                                                                                                           tctgaacataaaacactatcaataagttggagtcattaccTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAATGTAAAGAAATTGGGGATTGCAATTTTACTACTGCAATAGTTGATAATGTCATATTTAGATGTCGACGTTTACACAAtgt                                  >  1:118571‑M2/41‑251 (MQ=255)                                                                                                                                                                                                                                      tggagtcatttccTTTTGATGGAGAATGATGCGCAGGGGTATATCGACCTTTCTGATTTGGATTTAACTAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTGTTATCATCAAATCTACAACATGTAACATTCGAATGTAAAGAAATTTGGGATTGCAATTTTACTACTTCAATAGTTGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAAt        <  2:153060‑M2/237‑1 (MQ=255)                                                                                                                                                                                                                                            catgtccTTCGGATGGATAAAGATGCGCATGGGTATTTCGACTAGTCTGAGTTGGATTTAACAAGTTGTTATTTTAAAGGTGACGTTATAGCGAAGGTGTCTTTTTTATCATCAAATCTACAACAAGTAACATTCGAATGTAAATAAAGTGGGGATTGCAATTTTACTACTGCAATAGTAGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCTAGTGTTGAATGTATCg  <  2:7146‑M2/243‑1 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   TTTGATGAAACATGATGTGGTGCAAGGAAATAATATAGTAGATCTTGATTTACTACGTAATTTAAATGGGGTGCCAGGTTTAAACAGAGATAACTTTATTTATATCAGCAATATTTTTTCAAATATAAAACAACGGAACGAAAAAATCATGCAATAAATATGTTTCGTGAAGTCTCAATCAGTAATGATACTATAAGTGTAAAATTCTACAGAAATGAAAAAAATTGAATGCGCTTGCAATTTTCTGATGGATAAAGATGCGCAGGGGTATATCGACCTGTCTGATTTGGATTTAACAAGTTGTCATTTTAAAGGTGACGTTATATCGAAGGTGTCTTTTTTATCATCAAATCTACAACATGTAACATTCGAATGTAAAGAAATTGGGGATTGCAATTTTACTACTGCAATAGTTGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTCG  >  NC_000913/4250741‑4251225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.