New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	29 (0.990)	27/488	0.2	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	4525972 =	0 (0.000)					intergenic (‑169/+134)	yjhI/sgcR	putative DNA‑binding transcriptional regulator YjhI/putative DNA‑binding transcriptional regulator SgcR

ATAACTTGCCATACCAACCCATGCAATGTGGGTTAATATTTTTTCAGCACGGACTAATGAATTACACCCTTTGCGAACCATAATGGCTCCTCCTTGCTCATGGAATAAATGGTATCGGCATTACATAGTGGAAAATATGCTTTGTTCAGCATGCTGAACCGTAATGATGTGATTAAATGTGATCTTGTACACACTTTGAATAATGAATCCAGAACAGCCACATTTAGTGAATGAGAATAAAAAGTAGATGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGATCGTTTTAATACATGATAGTGTTGC  >  NC_000913/4525723‑4526219                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                        ccaacgccattcatggccatatcaatgattttctggtgcgtaccgggttgagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcaacatcaccgg                                                                                                                                                                                                                                                        >  1:282720‑M2/250‑251 (MQ=255)   aacgccattcatggccatatcaatgattttctggtgcgtaccgggtttagaagcggtgtaagtgaactgcagttgccatgttttacggcagtgagggcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctccaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCg                                                                                                                                                                                                                                                      >  1:347930‑M2/248‑251 (MQ=255)                         atgattttctggtgcgtaccgggtttagaagcggtgtaagtgtactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttgtgccgttacgcaccaccccggcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAgtgt                                                                                                                                                                                                                                <  2:67415‑M2/26‑1 (MQ=255)                                                  gagaagaggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgaggtccggcggtgcttgtgccgttacgcacccccccgttagtagcttaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacgctaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCttt                                                                                                                                                                                                        <  1:43707‑M2/50‑1 (MQ=255)                                                                       gcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCa                                                                                                                                                                                   <  1:166815‑M2/71‑1 (MQ=255)                                                                               catgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCt                                                                                                                                                                          <  1:228192‑M2/80‑1 (MQ=255)                                                                                     ttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTgg                                                                                                                                                                     <  1:336054‑M2/85‑1 (MQ=255)                                                                                       acggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGt                                                                                                                                                                   <  1:254915‑M2/87‑1 (MQ=255)                                                                                       acggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGt                                                                                                                                                                   <  1:141035‑M2/87‑1 (MQ=255)                                                                                            agtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGGGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCAtt                                                                                                                                                             >  1:329532‑M2/159‑251 (MQ=255)                                                                                             gtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTg                                                                                                                                                            >  1:249703‑M2/158‑251 (MQ=255)                                                                                                      agagatagcgctgctgtccggcggtgctttcgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGCTTAttttt                                                                                                                                                   >  1:294055‑M2/149‑251 (MQ=255)                                                                                                             cgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGcc                                                                                                                                                                                    >  1:89568‑M2/142‑211 (MQ=255)                                                                                                                 gatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggaggggaagctgctagaaacagaagccactggagcacctcaaaaacaccatcctacactaaatcagtaagttggcagcatcaccGGAGTGTTGTTGCAAAATAGTAGTGGGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCACATAGCCAATATTTTCTATTGGTGGCCATTGATTATTTTTGCTTGAACTcc                                                                                                                                        >  2:343410‑M2/138‑251 (MQ=255)                                                                                                                                  ttgccgttacgcacccccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAactta                                                                                                                        <  1:82921‑M2/130‑1 (MQ=255)                                                                                                                                  tggccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAactta                                                                                                                        <  2:274689‑M2/130‑1 (MQ=255)                                                                                                                                         tactcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccaatattcactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGGGTGGATTGCGCCGAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCa                                                                                                                 <  1:55925‑M2/137‑1 (MQ=255)                                                                                                                                                  ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGaa                                                                                                       <  1:315870‑M2/147‑1 (MQ=255)                                                                                                                                                                gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAaac                                                                                           <  1:293419‑M2/159‑1 (MQ=255)                                                                                                                                                                     ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaggtggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGAc                                                                                    <  1:256533‑M2/166‑1 (MQ=255)                                                                                                                                                                        gggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATc                                                                                 <  1:65128‑M2/169‑1 (MQ=255)                                                                                                                                                                                                     gagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGtc                                                    <  1:330924‑M2/198‑1 (MQ=255)                                                                                                                                                                                                             caaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGTTTATTTTTGCTTGAAATCCCTCTCGAATGCACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGtctc                                                  >  2:60400‑M2/46‑245 (MQ=255)                                                                                                                                                                                                             caaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGtctc                                                  <  1:60400‑M2/200‑1 (MQ=255)                                                                                                                                                                                                               aaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAAcc                                          <  1:343410‑M2/208‑1 (MQ=255)                                                                                                                                                                                                                         catacactaaatcagtaaggtggcagcatccccGGCGTGTTGTTGCAACATCGTAGTGTGTGGTTTGAGCCTAGAGCTTCTTTATTCGTTCGAGCGCCTCGCCAATATTTTCTATTGGGTGCCATTGGTTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCCCTTTATTGAATGATGTACACACAACTGACATCCGGCTCGATGATAACGCTGTGCAATAGACTAAGATAACCCGAtgtccct                                >  2:283839‑M2/34‑248 (MQ=255)                                                                                                                                                                                                                                              ggcagcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGCTCGTTTTAATACATg            >  1:59103‑M2/13‑250 (MQ=255)                                                                                                                                                                                                                                                 agcatcaccGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGATCGTTTTAATACATGATAg        <  1:215933‑M2/242‑1 (MQ=255)                                                                                                                                                                                                                                                       accGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCATCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGGTTATTTTTGCTTGAAATCCCTCTCGAATGGAATTACTTATCACTTTATTGAATGAGGTAGAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCACTGTCACTGATGATCGTTTTAATACATGGTAGTGTTGc  >  1:20630‑M2/4‑251 (MQ=255)                                                                                                                                                                                                                                                          ggCGTATTGTTGCAACATCGTAGTGTGTTGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCTCCTATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGaa                                                                                                                                <  1:46780/122‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                        ATAACTTGCCATACCAACCCATGCAATGTGGGTTAATATTTTTTCAGCACGGACTAATGAATTACACCCTTTGCGAACCATAATGGCTCCTCCTTGCTCATGGAATAAATGGTATCGGCATTACATAGTGGAAAATATGCTTTGTTCAGCATGCTGAACCGTAATGATGTGATTAAATGTGATCTTGTACACACTTTGAATAATGAATCCAGAACAGCCACATTTAGTGAATGAGAATAAAAAGTAGATGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGGGTGCCATTGATTATTTTTGCTTGAAATCCCTCTCGAATGAACTTACTTATCACTTTATTGAATGAGGTAAAAACAACTGACATCCGGCTCGCTGATAACGCTGTGCAATAGTCTCAGGTAACCCGCTGTCACTGATGATCGTTTTAATACATGATAGTGTTGC  >  NC_000913/4525723‑4526219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.