New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	21 (0.720)	21/488	0.4	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4235550	0 (0.000)					intergenic (+143/‑356)	pgi/yjbE	glucose‑6‑phosphate isomerase/uncharacterized protein YjbE

ACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATC  >  NC_000913/4235310‑4235788                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                               aCCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGGCGATATGTAGGCCGGATAAGGCGTTAACGCCGCATCCGGCAACCGATGACTGATGCGACGCGGGCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctg                                                                                                                                                                                                                                      <  2:2587‑M2/251‑11 (MQ=255)  ccGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgc                                                                                                                                                                                                                                     >  1:284347‑M2/1‑240 (MQ=255)           gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttact                                                                                                                                                                                                                            <  1:161619‑M2/251‑21 (MQ=255)                               aaGAAATCAGCAGACACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGAAGCGGTCGCGTCTTATCAGGCCTACAGGTCTGTGCAGATATGTACATCGTATTCGGCACTTACTACATAGCAGGTTTGggtgatgatgccaaattactgatttagtgtattatggggt                                                                                                                                                                                                        <  2:113363‑M2/251‑41 (MQ=255)                                aGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtt                                                                                                                                                                                                       >  1:24328‑M2/1‑210 (MQ=255)                                 gAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCCTCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCAATGCCTGCTGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACGTCGTCTTCGGCAATTAATACATAGCCCGATTTggtgatgctgccgacttaatgttttagtgtatgatggtgttt                                                                                                                                                                                                      <  2:278284‑M2/251‑43 (MQ=255)                                              aCGCTAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGATAATCATCGTCGCTATGTAGGCCGGATACGGCGATCACGCCGCCTCCGGCAACCGATGCCTGATGCGACGCGGTCGCGCCTTATAAGGCCTCCAGGTCGGTGCCGATAAGACCTTCGTCTTCGGCAATTAATACATAGCACGATTGggtgatgctgacaacttactgatttagtgtatgatggtgtttttgaggagctcc                                                                                                                                                                                          <  1:363369‑M2/250‑55 (MQ=255)                                                                               ataAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgt                                                                                                                                                        >  1:180512‑M2/1‑163 (MQ=255)                                                                               ataAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgt                                                                                                                                                        <  1:252328‑M2/251‑89 (MQ=255)                                                                                                                   ggCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagc                                                                                                                    >  1:47711‑M2/1‑127 (MQ=255)                                                                                                                     ccGGATCAGGCGTTCACGCCGCATCCGGCAACCGATACCTGATGCGACCCGGTCGCGTCTTATCAGGACTACAGGTCGATGCCGATATGTACCTCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatacgctgtccctcctgttcatctactgacgggggggtgcttaacggcaaaagcac                                                                                                                  <  1:326345‑M2/251‑127 (MQ=255)                                                                                                                              gCGTACACGCCGCATCCGGCAACTGATGCCTGATTCGGCGCGGTCGCGGCTTATCAGGCCTACAGGTCTATGCCGATATGTACATCGTATTCGGCAATTAATACTTAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgtgttgctccagtggcttctgtttttatcagctgtccctcctgttcagctactgacgggatggtgcgtaacggcaaaagcaccgccggaca                                                                                                         >  1:265400‑M2/1‑116 (MQ=255)                                                                                                                                         ccaTCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatc                                                                                              >  1:194726‑M2/2‑105 (MQ=255)                                                                                                                                              cGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgc                                                                                         <  2:115357‑M2/251‑152 (MQ=255)                                                                                                                                                           cTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgt                                                                             <  1:372373‑M2/250‑164 (MQ=255)                                                                                                                                                                                ttATCAGGCCTACAGGGCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctataagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactcccgtacaacatggcaactgcagttcc                                                       <  2:68409‑M2/251‑186 (MQ=255)                                                                                                                                                                                            cAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttacggatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtgttgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcaggtcacttacaccgctt                                           >  1:77957‑M2/1‑54 (MQ=255)                                                                                                                                                                                                        gATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggagtttttgaggagctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggaggtgcgtaacggcaaaagcaccgccggacatcagcgctctctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggt                                <  1:355088‑M2/250‑209 (MQ=255)                                                                                                                                                                                                                     tATTCGGCAATTAATACATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctattagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaat                  <  1:105785‑M2/251‑223 (MQ=255)                                                                                                                                                                                                                                    aCATAGCACGATTGggtgatgctgccaacttactgatttagtgaatgatggtgtttttgagatgcaccaggggcttctgtttctatcagctgtccatcctgttcagctactgaaggggtggtgcgtaacggcaaacgcaccgccggacatcagcgctatctctgctatcactgccgtaaaacatggcaactgcaattcaattacaccgcttctcaacccggtaagccacagaaactcattgatatggccat   <  2:325941‑M2/251‑238 (MQ=255)                                                                                                                                                                                                                                     cATAGCACGATTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatg  >  1:308724‑M2/1‑13 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                               ACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCGATGCCTGATGCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGATTGATTAAATAACCTTAATAACAATGCCGACGTTATGTCGGCATTTTTTTATCAGATAAATCCCCTTGTCTGTAATTTAACGGAAATCATACCGTGAGGTTAATCCTAAAATAGATTTTTAATCGTTGTTTATTTCGGAAAATACGCAGATTAATTGCTTTTGTTTTTATTTTAAGTTTATGATTTTTATTGTTATTTAAATATAAGTTGAAACTTATATTTGATATTCATTCCAATTATC  >  NC_000913/4235310‑4235788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.