New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979270	NA (NA)	35 (1.200)	32/488	0.1	97.2%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4569764	1 (0.030)					intergenic (‑1037/+398)	ytiE/yjiR	protein YtiE/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR

CCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATATATAAAAGGGGAGCAGCGCATTCTTCGATTGTTGTTGCAGAATGGGGCGGATCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAA  >  NC_000913/4569522‑4570002                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                               ccTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCAATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgc                                                                                                                                                                                                                                        <  1:251732‑M2/251‑9 (MQ=255)                                           gATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg                                                                                                                                                                                              >  1:132605‑M2/1‑201 (MQ=255)                                           gATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                                                                                                                    >  1:367159‑M2/1‑201 (MQ=255)                                                ggattatcGATCAACTGTTAGTATTACTGGTTACAGTGTGTGCTAATGACAGTCAGATAAATGCGCTGTTAAATTTCATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcca                                                                                                                                                                                         >  2:300865‑M2/4‑196 (MQ=255)                                                         ctcAACTGGTAGTATTACTGGTTACAGAGGGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACCTTTTACTGACTGGCGATGAAGCGCGTTTTAATGCGTTTATCAGAGAACTTACCCGTCGAATGCCACAACCAAGGGAGCGAATCATGACGGTTGCAGAGCGAATTCATAATGATGGATCggagaagcagccaacatactgatttagtgtatgatggtgtttttgaggagctacagaggcttct                                                                                                                                                                                <  2:332401‑M2/250‑65 (MQ=255)                                                                tgtagtatTACTGGTTACAGAGTGGGCTAATGACAGTCAGATAACTGCGCTGTGAAATTACAGTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCAGTCGAATGCCACAAAACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAAGGATGGATAggtgaggctgccaacttactgatttagtgtatgatggtgtttttgaggtgctctagtggcttctgtttct                                                                                                                                                                          >  2:40786‑M2/2‑180 (MQ=255)                                                                  tagtaTTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgattatatc                                                                                                                                                                       <  1:164187‑M2/251‑74 (MQ=255)                                                                   agtaTTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc                                                                                                                                                                       <  1:92996‑M2/250‑74 (MQ=255)                                                                      aTTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagc                                                                                                                                                                    >  1:104167‑M2/1‑174 (MQ=255)                                                                                aCAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggggtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctg                                                                                                                                                         <  2:11532‑M2/251‑88 (MQ=255)                                                                                 cAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgcttcagtggcttctgtttctatcagctgtccctcctgt                                                                                                                                                        <  1:11775‑M2/251‑89 (MQ=255)                                                                                            aaTGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                                                                                                                              >  1:95907‑M2/1‑152 (MQ=255)                                                                                                    ccAGATAACTGCGCTGGTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGATTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcgtctgtttctatcagctgtccctcctgttcagctactgactgggtgg                                                                                                                                     >  2:52365‑M2/1‑144 (MQ=255)                                                                                                     cAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTAACAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATATATAAAAGGGGAGCAGCGCATTCTTCGATTGTTGTTGCAGAATGGGGCGGAGCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAg                                                                                                                                    <  2:4574/251‑1 (MQ=255)                                                                                                             tGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                                                                                                            <  1:54105‑M2/251‑117 (MQ=255)                                                                                                                   gTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaa                                                                                                                        >  1:64559‑M2/1‑129 (MQ=255)                                                                                                                               tttACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggagatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggac                                                                                                          <  1:64115‑M2/251‑135 (MQ=255)                                                                                                                                                        tttAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcact                                                                                  >  1:150741‑M2/1‑92 (MQ=255)                                                                                                                                                               aGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccggaa                                                                           <  1:290285‑M2/250‑166 (MQ=255)                                                                                                                                                               aGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgaatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggccatcagcgctatctctgctctcactgccgtaa                                                                           <  2:86291‑M2/250‑166 (MQ=255)                                                                                                                                                                  ttATCAGTGAACTTACCCGTCAAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtctgatggggtttttgaggtgctccagtgacttctgtttctatcagctgtccctcatgttcagctactgacgggggggtgagttacggcaaaagcaccgccggacatacgcgctatctatgctctcactgccgaaaaacc                                                                       <  2:364915‑M2/251‑170 (MQ=255)                                                                                                                                                                           aaCTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactg                                                              <  1:63850‑M2/251‑179 (MQ=255)                                                                                                                                                                             cTTAACCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGCATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacaatgaaactgcc                                                            <  1:271625‑M2/251‑181 (MQ=255)                                                                                                                                                                              ttACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgc                                                             <  1:384044‑M2/249‑180 (MQ=255)                                                                                                                                                                                  ccGTCGAATGCCACAACCCAGAGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggagtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaaaggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggccaatgaagttc                                                        <  2:27015‑M2/250‑185 (MQ=255)                                                                                                                                                                                              acaacaCAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacgtcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgctt                                           >  1:27015‑M2/1‑54 (MQ=255)                                                                                                                                                                                                   acaGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaa                                      >  1:383854‑M2/1‑49 (MQ=255)                                                                                                                                                                                                       ggAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccg                                  >  1:308373‑M2/1‑45 (MQ=255)                                                                                                                                                                                                         aGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaactttctgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggggcgtaacggcaaaagcaccgccggacaccagcgctatctctgctctcactggcgtaaaacattgcaacggcagttcacttacaccgcttctcaacccggt                                >  1:327910‑M2/1‑43 (MQ=255)                                                                                                                                                                                                           cGAATAATGACGATTGCAGAGGGAATTAATAATGAGGGATAggtgatgctgcaaacttactgatttagtgtattatggtgttttggatgtgcttcagtggcttctgtttctaccagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatcactgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaccccggtac                              >  2:11775‑M2/1‑41 (MQ=255)                                                                                                                                                                                                                     cGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggcgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaa                     <  1:323781‑M2/250‑220 (MQ=255)                                                                                                                                                                                                                         tGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacgtactgatttagtgtatgatggtggttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                                                                                                                              >  1:248093‑M2/1‑27 (MQ=255)                                                                                                                                                                                                                           cAGAGCGAATTCATAAGGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcatt              >  1:108002‑M2/1‑25 (MQ=255)                                                                                                                                                                                                                                      cATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggcca    >  1:86291‑M2/1‑14 (MQ=255)                                                                                                                                                                                                                                      cATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttaacttaaaccgcttctcaacccggaacgacccagaaaatcattgatatggccat   <  1:218719‑M2/251‑238 (MQ=255)                                                                                                                                                                                                                                       aTAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatg  <  1:132894‑M2/251‑239 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                               CCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATATATAAAAGGGGAGCAGCGCATTCTTCGATTGTTGTTGCAGAATGGGGCGGATCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAA  >  NC_000913/4569522‑4570002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.