New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	271762 =	NA (NA)	22 (0.760)	16/484	0.6	NA	noncoding (1/429 nt)	IS911	repeat region
	?	NC_000913	= 4507456	NA (NA)					noncoding (332/334 nt)	IS911	repeat region

AGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGT  >  NC_000913/4507206‑4507705                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                          aGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCt                                                                                                                                                                                                                                                           <  1:193764/251‑1 (MQ=255)                                             tgttgACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataat                                                                                                                                                                                                                >  1:249972‑M2/1‑207 (MQ=255)                                                                              gAAAGCTATGGATGTTGGCCTTTACACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGTAGAATGAAATATTAAAAAGGCTaccgtgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcaca                                                                                                                                                                              >  1:186047‑M2/1‑174 (MQ=255)                                                                               aaaGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCGCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacac                                                                                                                                                                             >  1:164738‑M2/1‑173 (MQ=255)                                                                                      gggaTGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAATGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgaca                                                                                                                                                                      >  2:236411‑M2/2‑166 (MQ=255)                                                                                       ggagttttgcctttccaCAATAACAAGATGTGTCAAACAACTGCGTGATGAGCGTCAGGTCAAAACACCAAAATCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctctataatcgggaaactcagagcgcattatcctgtggtcacactatgccat                                                                                                                                                                     >  2:314148‑M2/9‑165 (MQ=255)                                                                                          tGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCCGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAACGCTACAACGGATTGAAATGGAGACTGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTAAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGttt                                                                                                                                                                   >  2:25841/1‑250 (MQ=255)                                                                                                     ccACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttca                                                                                                                                                       >  1:28445‑M2/1‑151 (MQ=255)                                                                                                                              acTGCGTGATGAGCGTCAGGGCAAAACAGCAAAAGCATCTCCGATAACACCCGAACAAATCGAAATACGTAAGCTGAGGAAAACGCTACAACGAATTGCACTAGAGAATGAAATATTAAAAAGGCt                                                                                                                                                                                                                                                           >  2:232236/1‑126 (MQ=255)                                                                                                                              acTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCGGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCt                                                                                                                                                                                                                                                           <  1:232236/126‑1 (MQ=255)                                                                                                                                                                   tctcCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGGACTGGAGACTGAAATATTAAAAAGGCTaccgcgctcttgatgtcagcctccctgaacagttctcgataatcgtgaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggctcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtat                                                                                         <  1:179167‑M2/251‑163 (MQ=255)                                                                                                                                                                           aaCACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcag                                                                                  >  1:88109‑M2/1‑81 (MQ=255)                                                                                                                                                                               ccAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCCTTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcagg                                                                             <  1:313635‑M2/251‑175 (MQ=255)                                                                                                                                                                                     cAAATCGAAATACGTAAGATGAGGAAAAAGCTACAACGCATTGAAATGGCGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgggttcggggttcatcgcagcagctacagatactggaaaaaccgtactgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttg                                                                       <  1:154738‑M2/251‑181 (MQ=255)                                                                                                                                                                                        aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagc                                                                    >  1:316444‑M2/1‑68 (MQ=255)                                                                                                                                                                                        aTCGAAATACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagc                                                                    <  1:237092‑M2/251‑184 (MQ=255)                                                                                                                                                                                               tACGTAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatgg                                                             <  1:80496‑M2/251‑191 (MQ=255)                                                                                                                                                                                                   tAAGCTGAGGAAAAAGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatc                                                         <  1:216110‑M2/251‑195 (MQ=255)                                                                                                                                                                                                              aaaaGCTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttc                                              >  1:294588‑M2/1‑46 (MQ=255)                                                                                                                                                                                                                   cTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataat                                                                                                                                                                                                                <  1:324176‑M2/84‑44 (MQ=255)                                                                                                                                                                                                                   cTACAACGCATTGAAATGGAGAATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataat                                                                                                                                                                                                                >  2:324176‑M2/1‑41 (MQ=255)                                                                                                                                                                                                                                       gaATGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcggccggagcaagaagcatcgccaca                     >  1:59982‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                                          tGAAATATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagcaacggttcggccggagaaagaagcatcgccacaatg                  <  1:350045‑M2/251‑234 (MQ=255)                                                                                                                                                                                                                                             aaTATTAAAAAGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcggccggagcaagaagcatcgccacaatggca               >  1:25614‑M2/1‑15 (MQ=255)                                                                                                                                                                                                                                                     aaaGGCTaccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcggccggagcaagaagcatcgccacaatggcaacccgg         <  1:79929‑M2/249‑243 (MQ=255)                                                                                                                                                                                                                                                           taccgcgctcttgatgtcagactccctgaacagttctcgataatcgggaaactcagagcgcattatcctgtggtcacactctgccatgtgttcggggttcatcgcagcagctacagatactggaaaaaccgtcctgaaaaaccagacggcagacgggctgtattacgcagtcaggtacttgagctacatggcatcagccacggttcggccggagcaagaagcatcgccacaatggcaacccggagaggct  <  1:184237‑M2/250‑250 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                          AGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAACTGGTTGTTGACCAGAAATACACGGTGGCAGATGCCGCGAAAGCTATGGATGTTGGCCTTTCCACAATGACAAGATGGGTCAAACAACTGCGTGATGAGCGTCAGGGCAAAACACCAAAAGCCTCTCCGATAACACCAGAACAAATCGAAATACGTAAGCTGAGGAAAAAGCTACAACGGATTGAAATGGAGAATGAAATATTAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACACCCCTTTCAATTATCTCTTTCGGTGTTTTGAACTTCAGTGTCTTTCTCGGTCTGTTGTTTAGCTGAGCAGCAACCAGATCTAGTTCATGTTGAGTATATTGGGCAAGACATGTCTTTTTAGGAAAGTACTGCCGAATTAGCCCATTTGTGTTCTCATTTGTTCCCCGCTGCCAAGGACTCTGAGGATCGCAGAAGTAAACTTTAACGCCGGTGCTGACAGT  >  NC_000913/4507206‑4507705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.