New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2812450	31 (1.060)	3 (0.100)	3/478	2.7	9.0%	coding (1024/1173 nt)	emrA	multidrug efflux pump membrane fusion protein EmrA
	?	NC_000913	= 2812532	30 (1.050)					coding (1106/1173 nt)	emrA	multidrug efflux pump membrane fusion protein EmrA
Rejected: Frequency below/above cutoff threshold.

GACGCAGATTGCCAATATGCGTATCGGTCAGCCGGTCACTATCACCACGGATATTTACGGCGATGATGTGAAATACACCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCGCTGTCACTGGCGACATTCATGCAGGTGC  >  NC_000913/2812206‑2812697                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                        gaCGCAGATTGCCAATATGCGTATCGGTCAGCCGGTCACTATCACCACGGATATTTACGGCGATGATGTGAAATACACCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGCAACAGCAGGAGCAATATCCGCTGCGTATCGGTTTGTCAACGCTggggg                                                                                                                                                                                                                                                   >  2:100457/1‑248 (MQ=255)        aTTGCCAATATGCGAATCGGTCAGCCGGTCACTATCACCACGGATATTTACGGCGATGATGTGCAATACACCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTCGCGCTTTCTCACTGCTTCCAGCGCACAATGCGACCGGTAACCGGATCAAAGTCGTTCAGAGACTGCCTGTGCGTATCGAACTGCACCAGAAACAGCGGGAGCAATATCCGCTGCGCATCGGATTGTCCACGCgggagagggtca                                                                                                                                                                                                                                             >  2:350410‑M1/1‑238 (MQ=255)               atatGCGTATCGGTCAGCCGGTCACTATCACCACGGATATTTACGGCGATGATGTGAAATACACCGGTAACGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCGCACTGCTTCCAGCACAAAATGCGACCGGTAGCTGGATCAAAGTCGTTCAACGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGCGCAATATCCGCTGCGTATCGGTTTTGCCACGCTGGTGAGcatccataaccct                                                                                                                                                                                                                                     >  2:326189/1‑239 (MQ=255)                       aTCGGTCAGCCGGTCACTATCACCACGGATATTTACGGCGATGATGTGAAATACACCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGa                                                                                                                                                                                                                             <  1:189797/251‑1 (MQ=255)                             cAGCCGGTCACTATCACCACGGATATTTACGGCGATGATATGACATACACCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCTGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGCGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCCCTACCCGttccggtcc                                                                                                                                                                                                                       >  2:42874/1‑243 (MQ=255)                             cAGCCGGTCACCATCACCACGGATATTTACGGCGATGATGTGAAATACACCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCa                                                                                                                                                                                                                       <  1:63270/251‑1 (MQ=255)                                                                 gatgTGTAATACACCGGTAAAGTGGTTGGTCTGGATTTGGGCCCAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGATCGGTAACTGGTTCAAAGTCGTTCATCGTCTGCCTGTGCGTATCGAACTGGGCCAGAAACAGCTTGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCgggag                                                                                                                                                                                    <  2:358079/250‑4 (MQ=255)                                                                         aTACACCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCa                                                                                                                                                                           <  1:92586/251‑1 (MQ=255)                                                                           acacCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCAc                                                                                                                                                                          <  1:42874/250‑1 (MQ=255)                                                                           acacCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGAACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCAcc                                                                                                                                                                         >  1:117065/1‑251 (MQ=255)                                                                                            ggtCTGGATATGGGCACAGGTAGCGCGTTCTCTCTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATAGCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAATTAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCt                                                                                                                                                        <  1:164558/251‑1 (MQ=255)                                                                                                 ggATATGGGCACAGGTAGAGAGTTCTCACTGCTTCCATCGTAAAAGTCGTCCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAATCCGCTGGAACAATATCCGCTGCGTATCGGTTTGTCCTCGCTGGTTAGCGTCAATCCCACTATCCGTGACGGTCAGGTACTGGCAAAAAAAGTACGTGCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCa                                                                                                                                                    <  2:33676/250‑1 (MQ=255)                                                                                                                      gTTCTCACTGCTTCCAGCGCAACATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGACCTGGACCAGCAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGAAAATAAAGTACGTTCCCCTCCGGTAGCGGTAAGCACCACGCGTGAAATCAGCATggagctcggaagagagtcgtggaggg                                                                                                                              >  2:54856/1‑227 (MQ=255)                                                                                                                      gTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTgg                                                                                                                                                      <  1:54856/227‑1 (MQ=255)                                                                                                                          tcACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTcc                                                                                                                                                                                         >  1:61900/1‑188 (MQ=255)                                                                                                                          tcACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTcc                                                                                                                                                                                         <  2:61900/188‑1 (MQ=255)                                                                                                                                    cAGCGAAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACTCTGGAGAGCGACAATACCCCTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGGTCCACTCCGGTTGCGGACATCACCGCGCGTGAAATCAGCCTGGCTCCCGTCAATaaaatgctcgcagctagcgtaaaacct                                                                                                                >  2:78768/1‑227 (MQ=255)                                                                                                                                               gCGACAGGTAACTGGATCAAAGTAGTTCAGCGTCTGCCTGTGCGCATCGAACTGGACCAGACACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGAACCACGCGTGAAATCAGCCTGGCACATATCCATAATCTGATCGACGATCTCGATAAAGCTAAcgctcgct                                                                                                      >  2:277805/1‑250 (MQ=255)                                                                                                                                                       tAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCgcggtgcttaccgctaccggagtggaacgtactttatttgccagtacctgaccgtcacggttagtggtattga                                                                                                                                                                                <  1:206513‑M1/168‑74 (MQ=255)                                                                                                                                                       tAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCgcggtgcttaccgctaccggagtggaacgtactttatttgccagtacctgaccgtcacggttagtggtattga                                                                                                                                                                                >  2:206513‑M1/1‑95 (MQ=255)                                                                                                                                                        aaCTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGCCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCagag                                                                                             <  1:184438/250‑1 (MQ=255)                                                                                                                                                                          cAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGc                                                                          <  1:151067/251‑1 (MQ=255)                                                                                                                                                                           aGCGTCTGCATGTGCGTATCGAACCGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTAGCGGTTTGTCCACGCTGGGTAGCGTCAATACCACTAACCGTGACTGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACTCTGGCTAATCCAGAGTTGCGTGTGATGCAACAGCa                                                                         <  2:83297/251‑1 (MQ=255)                                                                                                                                                                                cTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGAACCGCGCGTGAAATCAGCCTGACACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAACAAAAAc                                                                    >  1:288698/1‑251 (MQ=255)                                                                                                                                                                                cTGCCTGTGCGTATCGAACTGAACCAGAAACAGCTGGAGCCATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGAACGTTCCACTCCGGTAGCGGTACGCACCGCGCGTGAAATCAGCCTGGAACCTGACAATAAACTGATCGACGCTATCGTAACAGCAAACGATGGCTAATCAAGAGGGGCGTGTGATGCacaagacaaaa                                                                     >  2:69302/1‑240 (MQ=255)                                                                                                                                                                                           tATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCACATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGAGCGTGTGATGCAACAGCAAAAACCGCTGGAAGgc                                                         >  1:127597/1‑251 (MQ=255)                                                                                                                                                                                              cGAACTGGACCAGAAACAGCTGGATCAATAACCGCTGTGTATCGGTTTGACCACGCGGGTGAGCGTCAATCCCACTAACCGGGACGGACAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGgcgcg                                                      <  2:17909/251‑1 (MQ=255)                                                                                                                                                                                                   tGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGACGGCGCGCAACt                                                 >  1:123925/1‑251 (MQ=255)                                                                                                                                                                                                       ccAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGt                                                                                                                                                                                >  1:226601/1‑120 (MQ=255)                                                                                                                                                                                                       ccAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGGGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGt                                                                                                                                                                                <  2:226601/120‑1 (MQ=255)                                                                                                                                                                                                            aaCAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTAt                                        >  1:65532/1‑251 (MQ=255)                                                                                                                                                                                                                      gCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTgcg                              >  1:163328/1‑251 (MQ=255)                                                                                                                                                                                                                                  gCGTATCGGTTTGTCCACGCTGGTGAGCGTCAAGACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCCCTCCGGTAGCGTTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCGCTGTCACTGGc                   <  1:137659/250‑1 (MQ=255)                                                                                                                                                                                                                                                  ccGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGGAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCGCTGTCACTGGCGACATTCATGCAGGTGc  <  1:100457/250‑1 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                        GACGCAGATTGCCAATATGCGTATCGGTCAGCCGGTCACTATCACCACGGATATTTACGGCGATGATGTGAAATACACCGGTAAAGTGGTTGGTCTGGATATGGGCACAGGTAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGCGTCTGCCTGTGCGTATCGAACTGGACCAGAAACAGCTGGAGCAATATCCGCTGCGTATCGGTTTGTCCACGCTGGTGAGCGTCAATACCACTAACCGTGACGGTCAGGTACTGGCAAATAAAGTACGTTCCACTCCGGTAGCGGTAAGCACCGCGCGTGAAATCAGCCTGGCACCTGTCAATAAACTGATCGACGATATCGTAAAAGCTAACGCTGGCTAATCCAGAGGTGCGTGTGATGCAACAGCAAAAACCGCTGGAAGGCGCGCAACTGGTCATTATGACGATTGCGCTGTCACTGGCGACATTCATGCAGGTGC  >  NC_000913/2812206‑2812697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.