| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,492,583 | (G)6→7 | intergenic (‑58/+4) | idnT ← / ← idnO | L‑idonate/5‑ketogluconate/gluconate transporter/5‑keto‑D‑gluconate 5‑reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,492,583 | 1 | . | G | 85.0% | 43.8 / 2.0 | 20 | intergenic (‑58/+4) | idnT/idnO | L‑idonate/5‑ketogluconate/gluconate transporter/5‑keto‑D‑gluconate 5‑reductase |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base G (8/9); total (10/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGCCGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GG‑CTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTCCCCAGCGTGCGGCGGGGGTCCGTTTGCACAACCAGGCGGTGAAGGCTTCGTCCTCAACCAGTGCTTTAGTCATTTCTGTTTTGAAA > NC_000913/4492334‑4492782 | gATCATTCCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTTTGCACCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑Aggg‑g‑ggg < 1:227697/251‑2 (MQ=255) ccgccctccgagctagcggcCGATACCAGTTTGTATAGAGTGCAGGTCGGCCTGTGCATCCACCCCTTCGGCAATCCCGCCGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTATCTTTAAAGACGATCATCAGGATAAGAAGCAGCGCTCCGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCTCTGCACGT‑AGGG‑GTGG‑CTGTTAAAc < 1:69475/233‑1 (MQ=255) gggttgcggccgtttccATTTTGTATAGAGTGCAGGACGGCTTGTGCATCCACCCCTTCGGCAAACCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCAGAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAAc < 1:57905/236‑1 (MQ=255) aCCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATcaac > 1:108672/1‑251 (MQ=255) agagTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTg > 1:9578/1‑251 (MQ=255) gTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTCCCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGcc < 1:57355/251‑1 (MQ=255) tGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCg > 1:304685/1‑251 (MQ=255) gCAGTACGGCCTGTGCATCCATCCCTCCGGCAAATCCGACGACGGCAGCAACCAGAACGAGGGCAATAAATCCGTTAACTTTAAAGACGATCATCAGGATAAAAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCTCCATCAACAAACAACAGGTGGCCg < 1:320914/250‑1 (MQ=255) cTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATACAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGGAG‑GG‑CTGTTACACAGCCACTAACATGCCGCCCTCAACAAACAACAGGTGGCCGTTTACGAAATc > 2:100832/1‑251 (MQ=255) ccatccCTTCGGCAAATCCGCCGACGGCAGCTACCAGAAAGAGGGCAAAAAAGCCGTTAACTTTAAAGACGATCATCAGTATAAGAAGCAGCGCGCCGCCTGCCGCAATAAGGATTAATGGCATAGTCTTTTTCGCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCAGCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCtt < 1:133759/251‑1 (MQ=255) ggaaaaTCCGACTACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAATTTTAAAGACGATAATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAg < 1:100832/248‑1 (MQ=255) aaacccGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAAAAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGaa < 1:309426/247‑1 (MQ=255) aaTCCGACGACGGCAGCTACAAGAACGATGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGAGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTTGGGG‑G‑GG‑CTGTTAAACAGACACTAACATGCCGCCATCAACAAAAAACAGGTGGCCGTTTACGAAATCAGGGGCTTTTGAAGAAACGAac > 2:76358/1‑251 (MQ=255) cTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATc > 1:64987/1‑250 (MQ=255) aaTAAAGCCGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTcc > 1:150362/1‑251 (MQ=255) cGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGCCTCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAATCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACTCCGCAGCACCAATCAGTTCCTGCGGATCTCCCCAGCGTg < 1:254953/251‑1 (MQ=255) cGTTAACTTTAAAGACGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTCCCCAGCGTg > 1:46640/1‑251 (MQ=255) aCTTTAAAGACGATCATCAGGATAAGAAGCCGCGCGCCGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTCCCCAGCGTgcggcg < 1:302098/251‑1 (MQ=255) gaagCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGAGCCAGAAAAGCAGCGCTTTCGCGATGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCACCAAACAACAGGTGGCCGTTTACGAACTCAGAGGCTTTTGAAGAAAGGAAAACCGCAGCACCAATCAGTTCCTGCGGATCTCCCCAGCGCGAGGCgggggacccgttgcccaaaccagcgg > 2:330149/1‑230 (MQ=255) gCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTCCCCAGCGGGCGGCGGGGGTCCGTTTGCACAACCAGGCGGTGAAGGCTTCGTCCTCa < 1:327934/251‑1 (MQ=255) tctcTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTCCCCAGCGTGCGGCGGGGGTCCGTTTGCACAACCAGGCGGTGAAGGCTTCGTCCTCAACCAGGGCTTTAGTTCTTTCTGTTTTTaaa > 1:59233/1‑250 (MQ=255) | GATCATTGCCAGCCCGCCGAGCGTGCTGCCGATACCATTTTGTATAGAGTGCAGGACGGCCTGTGCATCCATCCCTTCGGCAAATCCGACGACGGCAGCTACCAGAACGAGGGCAATAAAGCCGTTAACTTTAAAGCCGATCATCAGGATAAGAAGCAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGT‑AGGG‑G‑GG‑CTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAAGGAACACCGCAGCACCAATCAGTTCCTGCGGATCTCCCCAGCGTGCGGCGGGGGTCCGTTTGCACAACCAGGCGGTGAAGGCTTCGTCCTCAACCAGTGCTTTAGTCATTTCTGTTTTGAAA > NC_000913/4492334‑4492782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |