| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 19,634 | (C)5→6 | intergenic (+14/+177) | nhaR → / ← insB1 | DNA‑binding transcriptional activator NhaR/IS1 family protein InsB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 19,634 | 1 | . | C | 95.0% | 57.1 / ‑2.8 | 20 | intergenic (+14/+177) | nhaR/insB1 | DNA‑binding transcriptional activator NhaR/IS1 family protein InsB |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (7/12); total (8/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.19e-01 | |||||||||||
TTGATGATGCCGCTTTGATGAAAGCTTTTGGTGCGATGCACAATGCAATCTTCGTTGCCCCAACGCTTTATGCATATGACTTTTATGCCGATAAAACTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGTGCGTTAATCGGCAGCTCCCCC‑A‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAT > NC_000913/19385‑19814 | gtgatgaTGCCGCGTTGTTGAAAGCTTTTGGTGAGCTGCAAAATGCAATCTCCGTTGACCCAACGTTTTATGCATATGACTTTTATGCCGATAAAACTGTCGTATAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATGCTGCGCTTATTAGTCCAGCGGCGCGTTAATCGGCAACTcaccc < 2:152441/249‑1 (MQ=255) tgatgaAAGCTTTTGGTGCGATGCACAATGCAATCTTCGTTGCCCCAACGCTTTATGCATATGACTTTTATGCCGATAAAACTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATCCGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTgggg > 2:94948/1‑251 (MQ=255) aaaaGCTTTTGGTGCGATGCACAATGCAATCTTCGTTGCCCCTACGCTTTATGCATATGACTTTTATGCCGATAAAACTGTCGTAGAAATTTGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAACCGGCACCTCCCCCCA‑AAGTTAAGGTGTGGgaga < 2:163588/250‑1 (MQ=255) tgcacctttcactCTTCGTTGCCCCAACGCGTTATGCCTTTGACTTTGATGCCGGAAAAACTGGTGTAGTAATTGTACGCGTCGAGTATTTGATGGTATAGTACCATTGTATTTTTGCTGAGCGTATGATTCAGCAGCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCTCTTTTTAGGCCAGAGGCGCGTTAATCGGCACTTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACAt < 2:209940/238‑1 (MQ=255) gCACAATGCAATCTTCGTTGCCCCAACGCTTTATGCATATGACTTTTATGCCGATAAAACTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCC‑CCAAGTTAAGGTGGGGGCGATAGATTAGTTGTACAta > 1:68260/1‑249 (MQ=255) tGCCCCAACGCTTTATGCATATGACTTTTATGCCGATAAAACTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCgg < 1:94948/250‑1 (MQ=255) cAACGCTTTATGCATATGACTTTTATGCCGATAAAACTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCatt < 1:85700/251‑1 (MQ=255) ttgaTGCCGATAAAACTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGATATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACAt < 1:251904/246‑1 (MQ=255) tGCCGATAAAACTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTc > 1:266122/1‑251 (MQ=255) aaaaCTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCAGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTCGGACAGCGGCGAGTTAATCTGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTATTTGTACATAACCCCGATTTTGACTCGGCTCATTATTGTCCCGATTTAGACAATATTTCCATATGt > 2:201590/1‑251 (MQ=255) cGTAGAAATTGTGCGCGTCGAGAATTTTATGGATGAGTACCATGCTATTTTTGCTGAGCGTATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGTATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTTGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGATCATTATTTGCCTGCTTGAGACATTATTTCCATATGTACGCggg < 1:79690/250‑1 (MQ=255) aaTGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGAATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATGCGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTAGGGGAGAGAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCAATATGGACGCGGGCGAATAAATAGAGGAATCTGAtt > 2:210806/1‑251 (MQ=255) cATGCTATTTTTTCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTAGTCTGCGTTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATg < 2:166177/251‑1 (MQ=255) gCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCACTACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACAACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGCTGCTGAAAAGagt > 2:134627/1‑250 (MQ=255) atTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCtttt > 1:12504/1‑248 (MQ=255) ggcggTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCTGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCttttaccatactgga < 1:353701/251‑15 (MQ=255) gcggTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCttttaccatactggat < 1:201590/251‑16 (MQ=255) cggTACATCGAACTTGCAATACGGATTAGTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGGAAAGAGTAGTAATTGCttttaccatactggatt < 2:119880/251‑17 (MQ=255) gTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGGCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGTGATGCTGAAAAGAGTAGTAATTGCttttaccatactggatttc < 1:134206/251‑19 (MQ=255) tACAGCGATTCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGCTTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGAGGATGCTGAAAAGAGGAGTAAtagatcgtaagatcgtcgtggagg > 2:224728/1‑228 (MQ=255) tACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGCGCGTTAATCGGCACCTCCCCCCA‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATAACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTATTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAAt < 1:224728/228‑1 (MQ=255) | TTGATGATGCCGCTTTGATGAAAGCTTTTGGTGCGATGCACAATGCAATCTTCGTTGCCCCAACGCTTTATGCATATGACTTTTATGCCGATAAAACTGTCGTAGAAATTGGTCGCGTCGAGAATGTGATGGAAGAGTACCATGCTATTTTTGCTGAGCGGATGATTCAGCACCCGGCGGTACAGCGAATCTGCAATACGGATTATTCTGCGCTTTTTAGTCCAGCGGTGCGTTAATCGGCAGCTCCCCC‑A‑AAGTTAAGGTGGGGGAGATAGATTAGTTGTACATTACCACGATTTTGACTCGGCTCATTATTTGCCCGCTTGAGACATTGTTTCCATATGTACGCGGGCGAATAAATAGAGGAATCTGATTACTTCCTTCATGGGGATGCTGAAAAGAGTAGTAATTGCTGGTAATGACTCCAACTTAT > NC_000913/19385‑19814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |