| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,966,530 | 0 | C | T | 80.7% | 55.1 / 10.2 | 31 | I38I (ATC→ATT) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base T (14/11); total (17/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.81e-02 | |||||||||||
| * | NC_000913 | 3,966,531 | 0 | C | T | 80.7% | 51.0 / 10.8 | 31 | L39L (CTG→TTG) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base T (14/11); total (17/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.56e-04 | |||||||||||
GTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACG > NC_000913/3966300‑3966768 || gggACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAaga < 2:79716/248‑1 (MQ=255) aaGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCttt > 1:134986/1‑251 (MQ=255) cGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGt > 1:38330/1‑251 (MQ=255) gACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTg < 1:222552/251‑1 (MQ=255) ccGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCTAAGATAGCTTTGGTGATGGCGTACTGga < 1:393698/251‑1 (MQ=255) cAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGACCTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAACGAGTGGCCAAGATATCTTTTGGGATGGCGTAATGgaggaattt > 2:354158/1‑245 (MQ=255) ccTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTgg < 1:36696/251‑1 (MQ=255) aTTCACAAAATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCAGGTTTCTGCGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGTAGCAGCACGCACAGAGTGGCGAAAATATCTTTGGTGATGGCGTAATGGAGATATTGCAGGATGGGTTTGGTTTTCTCCggt > 2:404230/1‑249 (MQ=255) tCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATTCGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATTGATTTGGTTTCCTCCGttt < 2:308615/250‑2 (MQ=255) acaTTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGa < 2:38330/251‑1 (MQ=255) ttCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATATGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATTTCTTTGGGTATGGCGTACTGGGGATATTGCCGGATGGATTTGGTTTCCTACGTTCCGCAGCCAGCTCCt > 2:128499/1‑251 (MQ=255) cGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAACTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTACGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGCGATGGCGTCCTGGGGGTATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAACTccaac > 1:214942/1‑248 (MQ=255) cAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCt > 1:278184/1‑251 (MQ=255) aaCTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGTGTTCTGAGCTGAGCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCt < 2:124850/251‑1 (MQ=255) aaCTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCAGATGACATCt < 1:366041/251‑1 (MQ=255) cTCACACCACTATGAATCTTACCGAATTAAAGAATCCGCCGGTTTCTGAGCTGATCACTCTCGGCGAAATTATGGGGCTGGAACACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGCAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGAGATGGGGGGATTGCAGGGTGGATTTGGTTTCCTTCTTTCCGTCGAAAGCTCCTACCTCACCGGTACtgagataatctac > 2:481952/1‑241 (MQ=255) aGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGTTTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTATCCAAATCCGCCGTTTCAAc > 1:439676/1‑251 (MQ=255) gCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCg > 1:217157/1‑159 (MQ=255) gCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCg < 2:69418/159‑1 (MQ=255) gCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCg < 2:217157/159‑1 (MQ=255) gCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCg > 1:69418/1‑159 (MQ=255) cTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCGAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGAttt > 1:37853/1‑147 (MQ=255) cTGATCACTCGCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCGAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGAGGGAttt < 2:37853/147‑1 (MQ=255) gtgcACTCTCGGCGAAAATAGTGGGCGGGAAACCCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCAATTTTGAAGCAGCACGAAAAGAGTGGCGAAGATATCTTTGGGGTTGGCGTACTGGATATAGTGCAGGATGGATTTGGTTTCCCCCTTTCCGCAGACAGCTCCTCCCTCGCCGGTCCTGAGGTCATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAtct < 2:278184/248‑1 (MQ=255) ccccGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTa < 1:262312/248‑1 (MQ=255) gcgtaggcttAAGCGGGAAATTATTTTTGCCTTTTTGAAGCAGTACGAAAAGAGGGGCGAATATATTTTTGGTGAGGGATGACTGGATATTTTGCAGGATGTATTTGGTTCCCCCCTTCCCGCAGACACCCTCTACCTGGCTGCTCCTGAGGACATCTACGTTCCCCCTAGCAAAACCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGTTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTAtt < 1:93238/242‑1 (MQ=255) gTATGCGTAAGCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAaagaag > 1:220165/1‑237 (MQ=255) gCAGGACATTATTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAAATATCTTTGGTGATGGCGTCCTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGAAGACAGCTCCTACCTCGCAGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCATTTCAACCTACGCACTGGTGATCCCATCTCTGGTAAGATTCGCCCGCCGAATGAAGGTGTACGCTCTTTTGCActgctg > 2:283543/1‑250 (MQ=255) tattTTTGCCATTTTGCAGCATCACGCAAAGAGTGGCGAAGATATTTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTACTCCCTTCCGCAGACAGCTGCTCCCTCGCCGGTCCTGATGACATCTACGATTCCCCTAGCCAAATCCGCCGTCTCAACCTCCGCACTGGAGAACCCCTCTCTGGTAAGATTCGCCCGCCGCAAGAAGGTGAGCGCTATTTTGCGTTGATGATAGTTAAct > 2:340794/1‑250 (MQ=255) tattTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGTTGCTGAAAGTTAACg > 2:317364/1‑251 (MQ=255) attTTTGCCAGTTTGAAGCAGCACGCAAAGAGTGGCGAAGGTATCTTTGGAGATGGCGTAATGGAGATAATGCAGGGTGGGTTTGGCTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATATAAGTTTCCCCTCGCCAAATCCGCCGTTTCCACCTCCGAAGTGGTCGTCCCATCTCTGGTAAGATTCGCCAGCCGAAAGAAGGGGATCGCTATTTTGCGCTGCTGAGAGTTaccg > 2:167624/1‑247 (MQ=255) || GTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTATTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGTACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCCGCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACG > NC_000913/3966300‑3966768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |