| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,123,823 | 2 bp→AG | coding (231‑232/648 nt) | grxB ← | reduced glutaredoxin 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,123,823 | 0 | G | A | 96.4% | 80.8 / ‑4.0 | 28 | L78L (CTG→TTG) | grxB | reduced glutaredoxin 2 |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (12/15); total (13/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
| * | NC_000913 | 1,123,824 | 0 | T | G | 96.3% | 82.2 / NA | 28 | L77F (TTA→TTC) | grxB | reduced glutaredoxin 2 |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (11/15); total (13/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
GTTTGTCCAGCGCACGTAAATCATCGCTGATATTCTTAATCAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AGTAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCT > NC_000913/1123586‑1124063 || gTTTGTCCAGCGCACGTAAATCATCGCTGATATTCTTAATCAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGGTTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCCGCCCCTCTTCAATGGCAGGGGATAGGTTT‑CCTGTC‑AATAACGGTTTGCCg > 2:319658/1‑251 (MQ=255) gCTGATATTCTTAATCAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGCGTTTATCGACATAGTGAACg > 1:218916/1‑250 (MQ=255) gATATTCTTAATCAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGt < 1:6796/251‑1 (MQ=255) aaTCAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGCCCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCttt > 1:453334/1‑251 (MQ=255) aGACCTTCAGAGTGGGCCCGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTTTGGGCGAGGAAATATTTGCGGGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGGCCATGCTTTCTgg < 2:474462/251‑1 (MQ=255) aGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAACTATTTGCGCGCGGCGGGAGTACAAAACTCCTCCAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑GGCCATTTGCCTTGAGCAGACCCTCTTAACTGGCAGGGGA‑ACGGTTCCCGGTC‑AAGCACGGTTTGCCGTCGGGTTTATTGACATAGAGAACGATTTCCCTGCATTCTgg > 2:279498/1‑251 (MQ=255) aGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGTCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACAAAGTGAACGATGTCCATGCTTTCTgg > 1:459984/1‑251 (MQ=255) cagaagGTCGGCAAAATTACCCGCGAGGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCACCAAAGGCCGATTTGGCAAAACGCGGCAACAGCCGTTTTT‑TGGCGT‑AGCCATTGCCCTTGCGCAGCCACTCGTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCAt < 2:1292/247‑1 (MQ=255) aaTTAACCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCTACGGGAGTAGAAAACTCATCCAATGCCGCTTTGGCAAAACGCGGCACCAGCAGTTTGT‑TGGAGT‑AACCATTGTCCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGGTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGGTTATCGACATAGTGAAAGATTGCCATGGTTTTTGGCATATAGCGGCTGTcctccttgtgaaggct > 2:283684/1‑235 (MQ=255) aTTACCCGCGCGGGCCTCTTTCTTGTCGACGAAAGATTTGCGCGCGGCGGGAGAAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGTCCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATgg < 1:456809/251‑1 (MQ=255) aCCCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGa > 1:187255/1‑250 (MQ=255) gTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATc < 1:319658/250‑1 (MQ=255) gcgacgaAATATTGGCCGGGGGGGGGAGTAGAAAACTCACCAAAGGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCg < 2:69934/250‑1 (MQ=255) tgcgcctggcggGATTAGAAACCCCATCAAACGCCGATTTGGCAAAACGCGGCAACAGCAGTTTTT‑TGG‑GTGAGCCAGTGCCCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTc < 2:445811/243‑1 (MQ=255) gTAGAAAACGCAACAAAGGCCTATTTGGCAAACCGCGGAAACAGC‑GTTTGGGTGGGGT‑AGCCATTGACCTGGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAg < 2:109042/251‑1 (MQ=255) tAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGGGTTTTTGCGTCGTCGTTgggg > 2:312596/1‑248 (MQ=255) aacgcatcaAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAAc < 1:312596/247‑1 (MQ=255) caAAGGCCGTTTTGGCAAAACGCGGCAACAGTAGTTTGT‑TGGCGT‑GGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTaa < 2:391002/250‑1 (MQ=255) tGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCg > 1:404521/1‑250 (MQ=255) cgcgGCAACAGCAGTTTGT‑TGTCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATAGAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAg < 1:425240/251‑1 (MQ=255) cgcgGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTCCAG‑AACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCTGAATGGGTACCTGTTTTTGACCGACCATTCGGGTGGGGGTTTTTGCGTTGTCGTTGGGAAGGACACTTAATTTGACGGGGATtttttta > 2:277839/1‑248 (MQ=255) cAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCg > 1:62741/1‑250 (MQ=255) agcggTTTGG‑TGGCGT‑GGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAAt < 2:62741/247‑1 (MQ=255) gtcgccgttGACTTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCGGGCATAGAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGa < 2:49637/244‑1 (MQ=255) ctTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCa < 1:38187/101‑1 (MQ=255) ctTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCa > 2:38187/1‑101 (MQ=255) gggA‑AAGTTTGCCGGTC‑AAGAACGGTTTGCCGTCGAGTTTATCGACATAGTGACCGATGTCCATGCTTTATGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGGGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGATGTGATCGTAAATGTATAGATTctcg > 2:412723/1‑248 (MQ=255) tGCCGGTC‑AAGAACGGTTTGCCGGCGTGTTTATCGACATAGTGAACGATGTCCATGCGTTCTGTCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGActcct < 2:119209/250‑1 (MQ=255) || GTTTGTCCAGCGCACGTAAATCATCGCTGATATTCTTAATCAGACCGTCAGAGTGGGCCAGCAGGTCGGCAAAATTACCCGCGCTGGCCTCTTTCTTGTCGACGAAATATTTGCGCGCGGCGGGAGTAGAAAACTCATCAAATGCCGATTTGGCAAAACGCGGCAACAGCAGTTTGT‑TGGCGT‑AGCCATTGACCTTGCGCAGCCACTCTTCAATGGCAGGGGA‑ACGTTTGCCGGTC‑AGTAACGGTTTGCCGTCGAGTTTATCGACATAGTGAACGATGTCCATGCTTTCTGGCATATAGCGGCTGTCATCTTTTTGCAGAATGGGAACCTGTTTTTGACCGACCATCCGGGTGGGTGTTTCTGCGTCGTCGTTGAGCAGAACATGTAATTCGACGGGGATATTTTTCAGGCCGAAAATCATGCGGGCTTTGAGGCAGTAAGGGCAGTGATCGTAAATGTATAGCTTCACGTGACTCCT > NC_000913/1123586‑1124063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |