| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,639,632 | A→G | I225I (ATT→ATC) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,639,632 | 0 | A | G | 97.0% | 97.9 / ‑4.2 | 34 | I225I (ATT→ATC) | arcA | DNA‑binding transcriptional dual regulator ArcA |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (20/12); total (20/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 | |||||||||||
ACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACG > NC_000913/4639396‑4639858 | aCCAGTGTGCTGGCGTTTGCGCTGGCCGGCATGATTTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTTCCGAAAAGGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTTAAAAATAAAAACGTCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGTGATAACCTTCACCGTGGATGGTGGCgatga < 1:302611/250‑1 (MQ=255) gcgcTGGCCGGCATGATGTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTtccggcgtatccggcgt > 1:307787/1‑251 (MQ=255) atgTTTGTGACTCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAA‑CGGCGCTAAAAAGAGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGtttt > 2:307759/1‑250 (MQ=255) ccGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAATTAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATAcggc < 2:189924/251‑1 (MQ=255) atatCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGAAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTCGATTCGAAATGTTTACGAATACGGCGGATc > 2:412443/1‑251 (MQ=255) gCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAATGGACGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAg < 2:124786/250‑1 (MQ=255) aaaTGACAGCCAGTAAAGAAGTTACAATGGCCTATCCCTTACGTATCTGGCAATGAGGTTGAAGAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGACGCGATAACCTTCACCGTGGATGGTGGCGATTCTTTCCGGCGTATCCGGCGTAGCTTCGATATGTTTACGGATCCGGCGGCACGTCACGGCTACAGTaaagttgtgtgggttt > 2:76371/1‑236 (MQ=255) aaGCCAGTAAAGAAGTGACAATGGATGATCAATTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAATCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGa < 1:263024/187‑1 (MQ=255) ccAGTAAAGAAGTTACAATGGACGAGCAATTACGTATCTGGAAAGAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGTTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTTGATGGTGGCGATGATTGCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCTTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACgg < 1:193828/251‑1 (MQ=255) atcaattACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGAGTAGATTCGAAATGTTTCCGAATACGGCGGATCGTCCCGTCTACAGTACGGTCGTGGGGTTTCAGCTCACGGCGCGG‑CCTTTTCTTCAGCCGTTc > 2:159024/6‑250 (MQ=255) gTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATCCGGCGGATCGTAACGTATACAGGACGGGCGTGTGGGTTCAGCTAACGGC‑CGGTCAttttttttcgccgttaaacaagagac > 2:457157/1‑229 (MQ=255) ttGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCCGTTCAGCACGAGACTGAATTTTGCCTgggg > 1:454547/1‑250 (MQ=255) tGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGGGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCCGTTCAGCACGAGACTGAATTTTGCCTggggt > 1:321264/1‑249 (MQ=255) aaaaTAAAAACGGCGCTAAAAAGAGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTCCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTGCTTCAGCAGTTCAGCTCGAGACTGAATTTTGCCTGGGTTTTc < 2:458224/251‑1 (MQ=255) aaaaCGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCAAGATCACCACAGAAGCGCTAACCTTCACCGTGGATGGTGGCGATGATTTCAGGCGTATCCGGCGTAGATTCGAGATGTTTACGAATACGGCGGATACTCAAGTCTAAAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGGCCTTTTTTTCCGCCGTTCAGCACGAGACTGAATTTTGCCTGGGGTTTCCCAGac > 2:214464/1‑250 (MQ=255) gcgcTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGTATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAg < 1:428747/251‑1 (MQ=255) gcgcTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGa > 1:437562/1‑249 (MQ=255) gcgcTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAg < 2:25784/251‑1 (MQ=255) aaaaGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGGGTGGTTTCAGCTCCCGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATggg > 1:45983/1‑250 (MQ=255) aaaGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGgcg > 1:253364/1‑251 (MQ=255) gcCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGaa < 1:350759/251‑1 (MQ=255) tttttGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGTAGCGATAACCTTCAACGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGGCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCATCAGTTCAACACGAGACTGTATTTTGCCTGGGTTTTTCCAGAAGTGAAGACTTGG‑GCGGAACTCGCTg > 2:373147/1‑251 (MQ=255) tttttGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGAACTCGCTg > 1:344047/1‑251 (MQ=255) ttttGACGGTGGTAAAGCCGATTAAACTTCCAGATCACCACATAAGCGAGAACCTTCACCGTGGATTGTGGCGATGATTGCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTGCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGAGGAACTCGCTg < 2:107003/250‑1 (MQ=255) aCGGTGGTAAAGCCGATTAATCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACgaga < 1:413133/193‑4 (MQ=255) gATTAATCTTCCAGATCAACACAGAAGCGTTAACCTTCACCGTGGATGGTGGCGATGGTTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATGGTCACGTCTACATTTATGTCGTGTGGGTTTATCTAACGGC‑AGGGCATTTTCTTTAGAAGTTCAGCACGGGAGTGGATTTTGCCTGGGTTTTCACAGATGTGAGT‑CATAGCGCGAAACtagcggacaggaagtttgcatataac > 2:55671/1‑226 (MQ=255) aTCTTCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCAt > 1:365049/1‑251 (MQ=255) tCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCCGTTCAGCACGAGACTGAATTTTGCCTGGGGTTTCACAGAAGTGAAG‑AATGGCGCGGGACTCGCTGcgcgaggttggaaaggcgtcgtgtagggg > 2:480796/1‑226 (MQ=255) tCCAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGAACTCGCTGcgcg < 1:480796/226‑1 (MQ=255) ccAGATCCCCACAGTAGCGATATCCTTCACCGTGGATGGGGGCGATGATTTCCGGCGTATTCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCGTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAgt < 2:13888/250‑2 (MQ=255) ccAGATCACCACAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGACGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGCCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTTATTTTCTTCAGCAGTTCAGCACGCGACTGCATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGCACTCGCTGCGCGGCAGCTTGTACTGCTCGCCACCAggg > 1:224873/1‑251 (MQ=255) acAGAAGCGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCaacg > 1:255342/2‑251 (MQ=255) cGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACt < 2:77666/154‑1 (MQ=255) cGATAACCTTCACCGTGGATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGTGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGAGACt > 1:77666/1‑154 (MQ=255) | ACCAGTGTGCTGGTGGTGGCGCTGGCCGGCATGATGTTTGTGACCCGTAATATCGACTGGTATGCGTTTTCACTGCCGAAAATGAAAGCCAGTAAAGAAGTTACAACGGACGATGAGTTACGTATCTGGAAATAAGGTTGAAAAATAAAAACGGCGCTAAAAAGCGCCGTTTTTTTTGACGGTGGTAAAGCCGATTAATCTTCCAGATCACCGCAGAAGCGATAACCTTCACCGTGAATGGTGGCGATGATTTCCGGCGTATCCGGCGTAGATTCGAAATGTTTACGAATACGGCGGATCGTCACGTCTACAGTACGGTCGTGCGGTTTCAGCTCACGGC‑CGGTCATTTTCTTCAGCAGTTCAGCACGGGACTGAATTTTGCCTGGGTTTTCACAGAAGTGAAG‑CATGGCGCGGAACTCGCTGCGCGGCAGCTTGTACTGCTCGCCATCAGGGCCGATCAACG > NC_000913/4639396‑4639858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |