| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,628,721 | C→T | intergenic (+174/+134) | nadR → / ← ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,628,721 | 0 | C | T | 97.1% | 98.3 / NA | 34 | intergenic (+174/+134) | nadR/ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (15/18); total (16/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGG‑CTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGA > NC_000913/4628473‑4628955 | gAAGAGGACGATTATGACAGCCGTTTCCTGCGCTGCGGGGAGCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGCGATGAAACGGCTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATc < 2:117590/251‑1 (MQ=255) aaggggcggtttaggacatccGTTTCCTGCGCTGCTGGGAGCTGGGGCGGGAGATGATGGGGGAGCAGAGATAACCGCGTTGAAACGGCTCAAAGGCGAGTTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATcc < 1:253817/231‑1 (MQ=255) cgATTATGACAGCCGTTTCCTGCGCTGCGTGGAGCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGCGATGAAACGGCTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGAAAATAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTc > 1:67165/2‑251 (MQ=255) tatgACAGCCGTTTCCTGCGCTGCGTGGAGCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGCGATGAAACGGCTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGt < 1:322169/247‑1 (MQ=255) atgacagcagTTTCCTGCGCTGCGTGGAGCGGGTGCGGGAGATGATGGGGGAGCAGAAATAACCGCGATGAAACGGCTAAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGGGACCCGCTACAAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCTTTCACGCCGTATCCGGCATTCGGTGc < 1:377086/242‑1 (MQ=255) atgACAGCCGTTTCCTGCGCTGCGTGGAGCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGCGATGAAACGGCTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGACGTATCCGGCATTCGGTGc > 2:443985/3‑251 (MQ=255) gTTTCCTGCGCTGCGTGGAGCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGCGATGAAACGGCTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGATTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGACGGAAAAAGCGTTCACGCCGTATCCGGCATTCggatatcaatgccc > 2:235967/1‑239 (MQ=255) tgcgctgcgTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGG‑CTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATgg > 2:383986/1‑250 (MQ=255) cgTGGAGCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGCGATGAAACGGCTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCtt > 1:161356/1‑250 (MQ=255) gTGCGGGAGATGATGGGAGCGCAGAGCTAACAGAGATGAAAAGGCTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGCAACCCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATAATAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCAGGCATTCGGTGCTCAATGCCTGATGCGACGATTACCGCGTCtt > 2:206899/1‑250 (MQ=255) gagaTGATGGGGGAGCAGAGATAACCGCGATGAAACGGCTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATACGGCATTCGGTGCGCAATGCCTGATGAGACGCTTACCGCGTCTTATCAGGc > 2:373100/1‑251 (MQ=255) aTAACCGCGATGAAACGGCACAAAGGCGAGGT‑TCAAAAAAATTTTTTTGATTGGTGGAAACCCTCT‑TGGCAAGAGGCCGTCGAGATAAAACAAAGTTTTAAAAAACCTGCACGGGTGCCCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCGGGAAAAGGTGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTAtt < 1:93043/251‑1 (MQ=255) aaCCGCGATGAAACGGCTCAAAGGCGAGTTATAAAAT‑AATTTTTTTGATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTg < 1:383935/250‑1 (MQ=255) cTCAAAGGCGAGGTATAAAATAAGTTTTTT‑GATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAAtttcttggtttgt > 1:3273/1‑239 (MQ=255) gttGATGAGTTGAAATCCTCTCGGG‑AAGATGCTGTCAAGATTAAACAAGGTTTGACAAACCCTGCACGGGTGACCCGCTACGAAATTGCGGATCCTAAGG‑CTGTTGTAGGCCGGAAAAGTCGTTTACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCAt < 1:166798/249‑1 (MQ=255) tgtatgaGTTGAAACCCTATCTGG‑AAGAGGTTGTCGAGATTAAACAAGTTTTGAAAAACCCTGCACGGGTGACCCGCCACGAAAGTGCGGAT‑ATAAGGGCTTTTGTAGGCCGGAAAAGGCGTTCACTCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATc < 1:196238/247‑1 (MQ=255) gaGTTGAAAACTTCTCTGG‑AAGAGGCGGTCGATAGTAAACAAGGTTAGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGAAACTAAGT‑CTGTGGTAGGCGGGAAAAGTCGTCCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGc < 1:294763/221‑1 (MQ=255) gTTGAAACCCTCTCTGG‑AAGAGGCGGTGAAGATTAACCAAGGTTTAAAAAAACCTGCCCGGGTGCCCCGCTACGAAATTCCGGATCTTAGGG‑CTGTTTTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTTTCAGGCCTGGAGATTCACAACGTATTGAAATTGCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAttt < 1:392895/251‑1 (MQ=255) agGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGATCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATAc > 2:407893/1‑251 (MQ=255) gtttacGAGATTAAAAAAGGTGTGAAAAAACCTGACCGGGGCCCCCGGTACGAAATTGCGGATACAAAGG‑CTGGGGTAGGCGGGAAAAGGCGGTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGGGGCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTCCACGCCTCATCCGGCATTTTACGCATTACTTCGCAATACGc < 1:175570/246‑1 (MQ=255) gagaTTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTAc > 1:347729/1‑251 (MQ=255) aaaCCCGCACGGGTGACCCCCTAGGAAATTGCGGATCCTAAGG‑CTTTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAgt < 1:193250/251‑2 (MQ=255) tGACCCGCTACGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCCATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGcccc > 1:332707/1‑250 (MQ=255) gtaCCCGCTACGAAATGGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGCCCa < 1:87030/249‑1 (MQ=255) ctaCGAAATTGCGGATACTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAAtttcttggtttg > 1:445579/3‑135 (MQ=255) ctaCGAAATTGCGGATACTAAGG‑CTGTGGCAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAAtttcttggtttg < 2:445579/143‑11 (MQ=255) acaaaattgcggagtataagcgttttgtAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGCCCAgcgtgcgt < 2:3273/226‑1 (MQ=255) atacTAAGG‑CTGTTGTAGGCCGGAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCtt > 1:447652/4‑251 (MQ=255) cTAAGG‑CTGTTGTAGGCCGGACAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCTCATCCGGCATTTTACGCCTTACTTCACAATACGCTTGTACTTGATAAGCTTCGGCTCCAGTGCATCTGCCCACCGACTGCGTTTCTTGTACTCTTCGt > 2:426072/1‑251 (MQ=255) tgttgtAGGCCGAAAAAGGCGTTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTcag < 1:414341/250‑3 (MQ=255) ccGGAAAAGGCGTTCACTCCGTATCCGGCAGTCGGTGCTCAATGCTTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCAGTAAAGTTAcc < 2:8142/251‑1 (MQ=255) aagggctttCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTGCTCAGTAAAGTTACCTTCga < 1:63140/244‑1 (MQ=255) aaaggcgtTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCAGTAAAGTTACCTTCg > 2:3333/7‑250 (MQ=255) aaaggcgtTCACGCCGTATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTGGAGATTCACAACGTATTGAAATTTCTTGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGTGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCAGTAAAGTTACCTTCg > 1:224243/7‑250 (MQ=255) | GAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGG‑AAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGG‑CTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAAGTTACCTTCGA > NC_000913/4628473‑4628955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |