| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 5,442 | T→C | L70P (CTA→CCA) | yaaX → | DUF2502 domain‑containing protein YaaX |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 5,442 | 0 | T | C | 97.1% | 101.6 / ‑5.5 | 35 | L70P (CTA→CCA) | yaaX | DUF2502 domain‑containing protein YaaX |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (16/18); minor base A (0/1); total (16/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
ACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCTACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGT‑AGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGC > NC_000913/5201‑5678 | aCCCATAACGGGCAATGATAAAAGGAGTAACCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GAcc > 1:92059/1‑251 (MQ=255) actggCAATGATAAAAGGAGTAACCTATGAAAAAGATGCAATTTATCGTACGCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGGTAGGCGATCGTGATAATCGTGGCTATTACTGGGAGGGAGGTCAC‑GGGCGCGACCACGGCGGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACTCG‑GACCGCCGCCa < 1:35770/248‑1 (MQ=255) cAATGATAAAAGGAGTAACCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCCCCCACACG‑GACCGCCGCCAccgcc > 2:93805/1‑251 (MQ=255) tGATAAAAGGAGTAACCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCcgcg > 1:281327/1‑251 (MQ=255) gAGTAACCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTTCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATa > 1:74827/1‑250 (MQ=255) aGTAACCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCCCCCACACG‑GACCGCCGCCACCGCCGCGCCACCATa > 2:361870/1‑249 (MQ=255) aaCCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGaa > 2:265784/1‑250 (MQ=255) aCCTATGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGaaa > 1:375654/1‑250 (MQ=255) aaaaaGAGTCAATCTATCTTACCCGCATTTTCCCGGGTTCTGGTCGCTCCCATGGCAGCACGGGCTGCGGAAATTATGTTAGCCCCGTAAGTAAAATTACAGATAGGCGATCGTGATAATCGGGGCTATTACTGGGATGGAGGTACC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCa < 2:39841/251‑1 (MQ=255) aaaGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATg < 1:265784/251‑1 (MQ=255) gCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGatcat < 1:93805/250‑1 (MQ=255) gTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTc > 1:421047/1‑250 (MQ=255) ttCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAAGGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAgg < 1:428908/249‑1 (MQ=255) gggtctgggTCGTTCCCAGGTCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTAAGTAAAATTACAGATAGGGGATCGTGATAATCGTGGCTATTACTGGGATTGAGGTCAC‑GGGCGCGCCCACGGCGGGTGGAACCAACATTAGTAATGGCGAGGCAATCGCGGGCCCCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGAGCAGCACGGCGGTCATGGTCCAGGCAAACAt < 2:302579/244‑1 (MQ=255) gcagcaAAGGCTGCGGAAATTACGTTAGTCCCGGCAGTAAAATGACAGATAGGCGATCTTGATAAGCGTGGTTATTACGGGGATGGGGGTCTC‑GGGCGCGCCCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGc < 2:403085/251‑1 (MQ=255) gggggtgaaaatttactgtAGTCCCGTATGTAAAATGACAGATAGGCGATCGCTATAATCTGGGCTATTACTGGGAGGGAGGTCTC‑TGGCTCCACCCCGTCGGGTTGAAACAACTGTAGGAATGGCGATGCATTCGCTGGCACCAAC‑CGTAACCGCCGCCACCGCCGCGCCACCATAAGAAAGCGCCTCATGATCATCACGGCGGTCATTGTCCAGGCAAACATCCCCGCTAAATGACAAATGCCGGGTaa < 2:303050/233‑1 (MQ=255) ggCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGAGCGTGAAAATCGTGGCTATTACGGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGAAAACAACATTATGAAGGGCGAGGCAACCGCTGGCCCCCACACG‑GCCCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAAt < 2:281327/250‑1 (MQ=255) tCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATTGTCCCGGCAAACATCACCCCTAAAATACCAATGCCGGGTAACAAACCGGCCTTCAGCGcccg > 1:441562/1‑249 (MQ=255) atttAAAATTACAGATGGGGGAGGGTGATAATCGTGGCTTTTCCTGGGA‑GGGGGGCACCGGGCGCGACCACGGCTGGTGGAAACAAAATTATGAATGGCGAGGCAATCGCTGGCCCCCACACG‑GCCCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCg < 2:411706/247‑1 (MQ=255) aGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGGCATTGGCCAGGCCAACATCACCCCTCAATGACAAAAGCCCGGGAACAAACCCGCATTCAACGCCTGATGCg > 1:411706/1‑249 (MQ=255) aaaTTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTg < 1:147639/251‑1 (MQ=255) gttcgtgtaaattgTGGCTTTTACGGGGAGGGAGGTCAC‑GGGCGCGACCACGGCTGGTGGAAAAAACATTAGAAAGGGCGAGGCAATCGCTGGCCCCCACCCG‑GCCCCCCCCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 2:441562/238‑1 (MQ=255) gATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACg < 1:362359/251‑1 (MQ=255) tATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGACGCCACCGCCGCGCCACCATAAGAACGCTCCTCATGATCATCACGGCGGCCATGGTACAAGGAAACAACACCGCTAAATGACCAATGCCGGGTAACACTACGGCACTCAGCGCCTGCTGCGACGCTGGCGCGTCTTATCAAGCCTACGTGAATTATGcc > 1:300758/1‑249 (MQ=255) aTTACTGGGAGGGAGGTCAC‑TGTCGCGACCACGGCTGGGGGAAACAACATTATGAATGGGGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCGGGCGCGTCTTATCAGGCCTACGTGAATTCTGCa < 1:407594/249‑1 (MQ=255) aTGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGGAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCCACGTGAATTCTGCCATATATTGAAt > 1:402508/1‑251 (MQ=255) c‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGGAACAATCCGGCATTCAGCGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGTGAATTTTGCAATATATTGAATCTGccttctt > 1:98296/1‑245 (MQ=255) acgggggcgACCGCGGCTGGTGGAAACAATATTATGAATGGGGAGGCAATCGCTGGCACCCACACG‑GCCCCCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGTGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCt < 1:404785/245‑1 (MQ=255) cgACCCCGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGCCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTGAATTCTGCAATATATTGAATCTGCATGCTTTTGT‑Ag < 1:160228/251‑1 (MQ=255) ggcgggtgaAAACAACATTATGAATGGCGGGGCAACCGTGGGCCCCCACCCG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTGAATTCTGCAATATATTGAATCTGCATGCTTTTGT‑AGGCCGGAt < 2:421047/247‑1 (MQ=255) ggttgAAACAACATTATGAAGGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTGAATTCTGCAATATATTGAATCTGCATGCTTTTGT‑AGGCCGGATaa < 1:125621/245‑1 (MQ=255) aacaTTATGAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGACCTGGGCCAGGCAAACATCACCGCCAAATGACAAATGCCGGGGAACAATCCCGCATTCAGCGCCCGATGCGACGCTGGCGCGGCTTTTCAGGCCTACGTGAATTTTTCCATATATTTAATCTGCATGCTTTTTTTAGAC‑GGATAAGGCGTTCAcgc > 1:215961/1‑251 (MQ=255) acaTTATGAATGGCGAGGCAATCGCTGGCCCCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTGAATTCTGCAATATATTGAATCTGCATGCTTTTGT‑AGGCCGGATAAGGCGTTCAcgcc < 1:193845/251‑1 (MQ=255) gAATGGCGAGGCAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCCGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGCCGCTGGCGCGTCTTATCAGGCCTGCGTGAATTCTGCAATATATTTAATCTGCATGCTTTTGT‑AGGCCGGATAAGGCGGTCACGCCGCATCCg > 1:460848/1‑251 (MQ=39) cAATCGCTGGCACCCACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCCTGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGGAAAAATCCGGCATTCAGCGCCCGATGAGACGCTGGCGCGTCTTATCAGGCCTACGTGAATTCTGCAATATATTGAATCTGAATGGTTTTTT‑AGTACGGATAAGGGGTTCCCGCCGCATCCGGCCATGACTGc > 2:336895/1‑251 (MQ=255) | ACCCATAACGGGCAATGATAAAAGGAGTAACCTGTGAAAAAGATGCAATCTATCGTACTCGCACTTTCCCTGGTTCTGGTCGCTCCCATGGCAGCACAGGCTGCGGAAATTACGTTAGTCCCGTCAGTAAAATTACAGATAGGCGATCGTGATAATCGTGGCTATTACTGGGATGGAGGTCAC‑TGGCGCGACCACGGCTGGTGGAAACAACATTATGAATGGCGAGGCAATCGCTGGCACCTACACG‑GACCGCCGCCACCGCCGCGCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACCGCTAAATGACAAATGCCGGGTAACAATCCGGCATTCAGCGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGTTAATTCTGCAATATATTGAATCTGCATGCTTTTGT‑AGGCAGGATAAGGCGTTCACGCCGCATCCGGCATTGACTGC > NC_000913/5201‑5678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |