| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,617,415 | C→T | A31A (GCC→GCT) | deoC → | deoxyribose‑phosphate aldolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,617,415 | 0 | C | T | 97.2% | 102.4 / ‑6.4 | 36 | A31A (GCC→GCT) | deoC | deoxyribose‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (29/6); total (29/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTGATCGCC‑CTGTGTCATCAGGCCAAAACTCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACTCTGAAAGAGCAGGGCACCCCGGAAATCCGTATCGCTACGGTAACCAACTTCCCACACGGTAACGACGACATCGACATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCC > NC_000913/4617187‑4617638 | aTCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTATATCGAAGTGGGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGAATGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGAACACCCTGAATGACGCCGATACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAAccc > 1:99609/1‑249 (MQ=255) tGTAAGTAGATTTCCTTAATTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CGGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACAGCCGCTATc > 2:43988/1‑251 (MQ=255) aaTTGTGATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCtt > 2:215748/1‑251 (MQ=255) gtgATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGCCGACACCGACGAGAAAGAAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTAACTGTATCTATCCTCGCTTTATc > 2:204722/1‑251 (MQ=255) gtgATGTATATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATc > 2:243380/1‑251 (MQ=255) tgtatATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCg > 2:481760/5‑250 (MQ=255) tatATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGAtt > 1:171144/3‑251 (MQ=255) acgtgagtTGCAGATTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATAGGCGACAAGCCAGGAGCATGAAATGACTGATCTGAAAGCAAGAAGCCTGCGAGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCATGCCAAAACCCCGGTC‑GGCAATACCGCCTCTATCTGTCTCTATCCTCGCTTTATCCCTATTGCTCGc > 2:349449/7‑250 (MQ=255) aGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGaa > 1:432392/1‑248 (MQ=255) gTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACAACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAag > 2:259405/1‑249 (MQ=255) ttAGAATACTAACAAACGCGCAAGGTGAATTTTCTTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGACTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAACACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑ACCACTGCAAGAGCAggac > 2:403661/1‑248 (MQ=255) aaaTACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGATAATGAAATGACTGCTCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATAACGACAACACCGACGAAAAAGAAATTGCT‑CTGGGTCATCAGGCCAAACCCCCGGTC‑GGAAAAACCGCCGCTCTCTGTATCTCTCCTCGCATTATCCCGCTTGCTCGCAA‑AAcaatcaaaaaccaggccaccc > 2:267087/2‑231 (MQ=255) gccTCGCAAGGGGTATTTTATTGGCGACAAACCAGGAGAATGAAAAGACTGATCTGAAAGCAAGAAGCCTGCGAGCACTGAAATTGATGGACC‑TGACCACCCTGAATGGCGACGACACCGACGCAAAAGTAATTGCT‑ATGATTCAACAGGCCAAAACCCCGGCC‑GGCAATACCGAACCTATCTGTATCTATCCTCTCTTAATCCCGATTGCTAGCAACGAC‑CTGAAAGAGCAGAGCCCCCCGGAAATcagt > 2:418260/3‑248 (MQ=255) aaGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCt > 1:113940/1‑250 (MQ=255) aGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGCCTGATCTGAAAGCACGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTCTCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTAc > 2:398917/1‑251 (MQ=255) aTTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAAc > 1:466497/1‑251 (MQ=255) tttATTGGCGACAAGCAAGGAGAATGAAATGACTGATCTGCAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAAAGAAGGGCACCTCGGAAATCAGTATTGCTACGGTaccc > 2:322958/1‑247 (MQ=255) aggggcgacaggcagggAGAATGAAATGATGGATCGAAAAGCAAGCAGCCTGTGTGCACTAAAATTGTTGGACC‑TGACCACCCTGAATGACGACGACACCGACGAAAAAGTAATTGCT‑CGTTTTCATCAGGCAAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAAc < 1:308952/235‑1 (MQ=255) ggAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACCCGGTAacg > 2:178662/1‑251 (MQ=255) gagaAAGAAATGACTGATCGAAAAGCAAGCAGCCTGCGTGCACTGAAATGGATGGACC‑TGACCCCCCTGAATGACGACGCCACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCAAAACCCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTTCGGTAACCAACTTCCCACACGGTAacga < 1:459037/251‑1 (MQ=255) agaaaatgatggATCAGAAAGCAGGCAGCATGCGTACACAAAAATTAATGGCCC‑GGCCCCCCCGGAAGGACGACCACCCCGACGAAAAATTATTTGCT‑CTGTGTCAACAGGCAAAACCCCCGGCC‑GTAAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACgatgac < 2:466497/240‑1 (MQ=255) aatgaCTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGCCGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGAAACCAACTTCCCACACGGTAACGAtgacatcg > 1:472046/1‑251 (MQ=255) atGATCTAAAACCAAGCAGCCTGTGTGCACTGAAATGGA‑GGACCCTCACCCCCCTGAATGACGACGACCCCGCCGAAAAAGTAATTGCT‑CTGTTTCAGCAGGCCAAACCCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATgacatcgaaatc < 1:285173/250‑1 (MQ=255) gAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGCCC‑TGCCCCCCCGAAATGACGCCAACCCCGACGAAAAAGTAATTGCT‑CTGTTTCACCAGACAAAACCCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATcgc < 1:259405/246‑1 (MQ=255) cTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGc > 1:139142/1‑251 (MQ=255) gCGTGCACTAAAATTTATGGACC‑TGCCCCCCCTGAATGCCGACGACCCCGACGATAAATTAATTTCT‑CTGTGTCTTTGGGCCAAACCCCCGGTC‑GCCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACTATGACATCGAAATCGCGCTGGCAGAAACCCGTGCgg < 1:396346/251‑1 (MQ=255) gTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CCGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGc > 2:303330/1‑250 (MQ=255) tGCACTGAGATAGCTGGACC‑TGACCACCCTGAATTCCGACGACACCGACGAGAACGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGCTTGCTCGCAA‑AACCCTGAAAGCGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGCCAGAAACCCGTGCGGcc > 2:267937/1‑249 (MQ=255) tGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACggg > 1:252660/1‑250 (MQ=255) cccTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTaa > 1:346372/1‑165 (MQ=255) cccTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTACGGCAATCGCCTACGGTGCCGATGAAGTTGAc > 1:341694/1‑251 (MQ=255) cTGAATGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAC‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCACTCGCCTCCGGTGCCGATGAAGTTGACGt > 1:301789/1‑251 (MQ=255) aggacgacgacACCGACGAAAAAGTAAT‑GCCTCTGTGTCATC‑GGGCAAAACCCCCGTCCGGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACgtggtg < 1:463292/249‑1 (MQ=255) aTGACGACGACACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAAccc > 2:6805/1‑210 (MQ=255) cgacgacACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTcc > 1:236254/1‑251 (MQ=255) cgacgacACCGACGAGAAAGTAATTGCT‑CTGTGTCATCAGGCCAAAACCCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACACTGAAAGAGCAGGGCACCCCGGAAATCCGTATTGCTACGGTAACCAACTTCCCACACGGTAACGATGACATCGAAATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCCGATGAAGTTGACGTGGTGTTcc > 1:121559/1‑251 (MQ=255) | ATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATCGAAGTGTGTTGCGGAGTAGATGTTAGAATACTAACAAACTCGCAAGGTGAATTTTATTGGCGACAAGCCAGGAGAATGAAATGACTGATCTGAAAGCAAGCAGCCTGCGTGCACTGAAATTGATGGACC‑TGACCACCCTGAATGACGACGACACCGACGAGAAAGTGATCGCC‑CTGTGTCATCAGGCCAAAACTCCGGTC‑GGCAATACCGCCGCTATCTGTATCTATCCTCGCTTTATCCCGATTGCTCGCAA‑AACTCTGAAAGAGCAGGGCACCCCGGAAATCCGTATCGCTACGGTAACCAACTTCCCACACGGTAACGACGACATCGACATCGCGCTGGCAGAAACCCGTGCGGCAATCGCCTACGGTGCTGATGAAGTTGACGTTGTGTTCC > NC_000913/4617187‑4617638 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |