| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,546,272 | A→C | T393P (ACC→CCC) | fimD → | type I fimbriae usher protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,546,272 | 0 | A | C | 94.1% | 100.9 / NA | 34 | T393P (ACC→CCC) | fimD | type I fimbriae usher protein |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base C (17/15); total (19/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTCACTATTAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAATATTC > NC_000913/4546025‑4546518 | ggTCACTATTAAACAAAATGGGTATTACATTTATAATAGGACGGTGCCACCGGGGCCGTTTACCAACAACGATATCTAGGCCGCAGGTAATAGTGGTGACGTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACTCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAcccc < 2:144573/251‑1 (MQ=255) cTATTAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAAAACCGTAGTGGAAATGCGCAGAAGGAAAAACCCCGCttt > 2:279237/1‑251 (MQ=255) aTTAAACAAAATGGGTATGACATTTATAATAGTACGGTTCCACCGGGGCCATTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCtttt < 2:290351/250‑1 (MQ=255) aaCAAAATGGGTATGACATTTATAAGAGTCCGGTGCCACCGGGGCTTTTTACCATCAACGATATCTAGGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGTCGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCat < 2:46834/251‑2 (MQ=255) tATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGGGGAAATGGGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTAcc > 1:246708/1‑250 (MQ=255) aTGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACt < 1:19320/250‑1 (MQ=255) aGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGGAGTGGAAATGCGCCGCAGGAAAAAACCCCCTTTTTCCAGAGTACATTACTCCACGGCCTTCCggc > 2:153569/1‑251 (MQ=255) cGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCCCTTTTTCCAGTGTACATTACTCCACGGCCTTCCggctagc > 1:258592/1‑248 (MQ=255) gggCCTTTTACCATCAACGCTATCTATGCCGCAGGTCATAGTGGTGACTTGCAGGTAAAGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGATATGCGCAGCAGGCAAAACACCGCTTCTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTCGACAatagt > 1:178107/1‑249 (MQ=255) aCGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTc < 2:8887/206‑1 (MQ=255) aCGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTc > 1:8887/1‑206 (MQ=255) aCGATAGCTATGCCGCAGGTAATAGTGGTGACTTGTAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTGCCGGCTGGCTGGACAATATATGGTGGAACGCAACTg < 2:284026/251‑1 (MQ=255) cTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATc > 1:73444/1‑251 (MQ=255) aTGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGt < 1:316507/251‑1 (MQ=255) tAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGGACATTACTCCCCGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGttctccggctt > 2:8627/1‑242 (MQ=255) tgtgACTTGCAGGTAATGCTCAAATAGGCTGACTGCAGCACGCAGATTATTACCGTTCCCTCTTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATGCCATTACGGCAGGAGCATACCGTAGTGGAAATGCTCCGCAGGAAAAACCCCGCTTTTGCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGCCAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTaact < 2:409374/249‑3 (MQ=255) gTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCgggg > 1:9997/1‑249 (MQ=255) gataaaaGAGGCTGACGGAAGCACGCAGATTTTTACCGTACACTATTCGACAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAAc < 2:399288/197‑1 (MQ=255) gATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAAc > 1:399288/1‑201 (MQ=255) gATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCACGCTTTTGCAACGGGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCACGCTTTTTCCAGAGGACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAAAGCAACTGGCGGGTCGGTAACGTGCTTTTATATTCGGTATCGGG‑AAAAAc > 1:8541/1‑250 (MQ=255) ggCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATAACGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACCTTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAAAGCACCTGGCGGATCGATATCGTGCTTTTAATTTCGGTATCGGG‑AAAACAAAGGGGGCAc > 1:49433/1‑251 (MQ=255) gACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGGTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTg < 1:153569/249‑1 (MQ=255) cagcaCGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGctc > 1:371632/1‑251 (MQ=255) agcaCGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGCGAATACCGTAGTGGAAATGCGCAGCCGGAAAAAACCCGCTTTTTCCAGAGTACATTACTTCACGGCCTTCCCGCTGGCTGGACAATATATGGTGGAACGAAACTGGCGGGTCGTTATCGTGCTTTTCATTTTTGGATCGGGGAAAAACAggggggacaaggcgctcc > 2:446781/1‑239 (MQ=255) gTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGc > 1:392332/1‑250 (MQ=255) ccTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCt < 2:9997/251‑1 (MQ=255) cGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGGACATTACTCCACGGCCTTCCGGCTGGCTGGGCCATATATGGTGGAAAGCAACTGGCGGATGGTTATCGGGCTTTTAATTTCGGGATCGGG‑AAAAAAATGGGGGCCCTGGGCCCCCTTTCTGTGGATATGACGCGGGCTAATTcc > 2:330251/1‑251 (MQ=255) gcAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCcac < 1:372188/250‑1 (MQ=255) ccAGTCCCGCTTTTGCAACGGGAAGGGAATCCTCTTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACCCCGCGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGAAGGCTAATTc < 2:379237/247‑1 (MQ=255) cAGTCCCGCTTTTGCAACGTGAAGGACATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACCATATATGGGGGAACGCGAATGGCGGATCGGTCTCGTGCTTTTAATTTCGGTATCGGG‑CAAAACCTGGGGGCACTGGGCGCTCTTTCTGAGGGTATGACGCAGGCTAATTCcac > 1:7372/1‑250 (MQ=255) aTTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTg < 1:287895/251‑1 (MQ=255) gCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAACCCCTCTTTTTCCAGAGTCCATTTCTCCACGGCCTTCCGGCGGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCTTTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGTCGCATGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCta < 2:479510/251‑1 (MQ=255) cagGAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATTCCGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATgcatacggcccga > 2:15811/1‑238 (MQ=255) ggAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAAt < 2:444811/203‑1 (MQ=255) ggAAAAACCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAAt > 1:444811/1‑203 (MQ=255) aaaacCCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAATATTc < 1:184403/251‑1 (MQ=255) | GGTCACTATTAAACAAAATGGGTATGACATTTATAATAGTACGGTGCCACCGGGGCCTTTTACCATCAACGATATCTATGCCGCAGGTAATAGTGGTGACTTGCAGGTAACGATCAAAGAGGCTGACGGCAGCACGCAGATTTTTACCGTACCCTATTCGTCAGTCCCGCTTTTGCAACGTGAAGGGCATACTCGTTATTCCATTACGGCAGGAGAATACCGTAGTGGAAATGCGCAGCAGGAAAAAACCCGCTTTTTCCAGAGTACATTACTCCACGGCCTTCCGGCTGGCTGGACAATATATGGTGGAACGCAACTGGCGGATCGTTATCGTGCTTTTAATTTCGGTATCGGG‑AAAAACATGGGGGCACTGGGCGCTCTGTCTGTGGATATGACGCAGGCTAATTCCACACTTCCCGATGACAGTCAGCATGACGGACAATCGGTGCGTTTTCTCTATAACAAATCGCTCAATGAATCAGGCACGAATATTC > NC_000913/4546025‑4546518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |