| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,664,594 | G→A | L9F (CTC→TTC) | gadW ← | DNA‑binding transcriptional dual regulator GadW |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,664,594 | 0 | G | A | 90.5% | 52.4 / ‑1.2 | 23 | L9F (CTC→TTC) | gadW | DNA‑binding transcriptional dual regulator GadW |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (9/10); total (11/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.68e-02 | |||||||||||
GCATGGGGGGTGACTGGTTAATTAACAAACGGTCTTTGCTGTGTAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAAGTAATGGCAAACTGTCAGCTCATCGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAATTGATAATAAGTAAATGCAGCACGAATATATTTTCGCACAGCGTATAGCTTATGTTTATAAAAAAATGGCT > NC_000913/3664354‑3664830 | gCATGGGGGGTGACTGGTTAAGTAACAAACGGTCTTTGCTGTGTAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAAGTAATGGCAAACTGTCAGCTCATCGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAg < 1:450685/251‑1 (MQ=255)gCATGGGGGGGGACTGGTTAATTAACAAACGGTCTTTGCTGTGTAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAAGTAATGGCAAACTGTCAGCTCATCGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAAGCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTAGGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAg < 2:136031/251‑1 (MQ=255) gtttaattatCAAACGGTCTGTGCTTGGGAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAATTAATGGCAAACTGTTAGCTCATCGATATCCAGTCTTCGCGTAGCCGGTGAACAAAACGCAAAATCGTCTGCTAAATTTTTCTCCAGCAGCAGAATTCTCTCGTTATGCAGCGAGATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCGGACATGAGTCAt < 2:286977/248‑1 (MQ=255) ttaattaaCAAAAGGTCTTTGCTGTGTAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAAGTAATGGCAAACTGTCAGCTCATCGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGACTGAAGATAACCGAGCAGACATGAGTCATgtt > 1:291114/1‑249 (MQ=255) ttaaCAAACGGTCTTTGCTGTGTAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAAGTAATGGCAAACTGTCAGCTCATCGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGTTTATc > 2:185277/1‑251 (MQ=255) aaaCGGTCTTTGCTGTGTAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAAGTAATGGCAAACTGTCAGCTCATCGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTta < 1:96629/251‑1 (MQ=255) tttGCTGTGTAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAAGTAATGGCAAACTGTCAGCTCCTAGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGAAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGGGTCATGATTATCCCTTATATTTCAt > 1:447134/1‑251 (MQ=255) aaTGGCAAACTGTCAGCTCATCGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGtt > 1:344010/1‑251 (MQ=255) cGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAg < 1:154312/251‑1 (MQ=255) aggcgtcgCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCACGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTaatgaaat < 2:99886/205‑1 (MQ=255) aGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTaatgaaat > 1:99886/1‑208 (MQ=255) aaCGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAACTTATCCTCAAagta < 2:241921/251‑1 (MQ=255) aaaaTCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGAtt > 1:73916/1‑127 (MQ=255) aaaaTCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGAtt < 2:73916/127‑1 (MQ=255) aTTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAAtt > 1:371960/1‑251 (MQ=255) cagcaccagAATACTATCGTTATGCAGCGATATTTTGTGATGTTCATGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCATACATGAGTCATGATTCTCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAACCTGCCAGATTTTGTAGGA‑CCAAAATTTCTCCACAAAGTAGTTTTGCATAACAGTTAAGTGAtaataac < 2:215478/251‑2 (MQ=255) cGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAATTGATAATAAGTAAATGCAGCACGAata < 2:164678/251‑1 (MQ=255) ttttttGCTGTTCATGATACATATCGAATGAACGACGAATGACGTTCACCGTGCAGACATGAGCAATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTACTGAAATGATGCCAGACTGTTTCTCAGCGTAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAATTGCTAATAAGTAAATGCAGCACGAATATATTTTCGCAAAGCg > 2:272940/1‑251 (MQ=255) aTGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAATTGATAATAAGTAAATGCAGCACGAATATATTTTCGCACAGCGTATAGCTTATGtt < 1:285586/251‑1 (MQ=255) aTGATAAATATCGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAATTGATAATAAGTAAATGCAGCACGAATATATTTTCGCACAGCGTATAGCTTATGtt > 1:259417/1‑251 (MQ=255) cGAATGAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAATTGATAATAAGTAAATGCAGCACGAATATATTTTCGCACAGCGTATAGCTTATGTTTATAAAAAAAt > 1:194965/1‑251 (MQ=255) aTGAACGACGAATGACGAACACCGAGCAGCCATGAGTCGTGATTATACCTTATATTTCACACTGCGATGATTTCACTTTCAAAATACTACTGAAAAGCTAACAGACTGATTCTTAGCGCAAAGACTGCCAGATTTG‑ACGGAGCCAAAATTTAGCCACACAGAACTTTTGCATAAAAGTTAATTGATAATAAGTATGTACAGCACGAATATATTTTCGCACAGCGTATAGCTTAACTTTATAAAAAACTGGc > 2:401872/1‑251 (MQ=255) agAACGACGAATGAAGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAATTGATAATAAGTAAATGCAGCACGAATATATTTTCGCACAGCGTATAGCTTATGTTTATAAAAAAATGGCt < 1:151093/250‑1 (MQ=255) | GCATGGGGGGTGACTGGTTAATTAACAAACGGTCTTTGCTGTGTAACCCTAAATTGCGTGGTAGCTGACGAATATTTTGTAAGTAATGGCAAACTGTCAGCTCATCGATATCCAGTCGTCGCGTATCCGGTGAACAAAACGCAAAATCGTCTGCCAAATTTTTCTCCAGCAGCAGAATACTCTCGTTATGCAGCGATATTTTTTGCTGTTCATGATAAATATCGAATGAACGACGAATGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTATACTAATGAAATGATGCCAGACTGTTTCTTAGCGCAAAAACTGCCAGATTTGGTAGGA‑CCAAAATTTATCCACAAAGTAGTTTTGCATAACAGTTAATTGATAATAAGTAAATGCAGCACGAATATATTTTCGCACAGCGTATAGCTTATGTTTATAAAAAAATGGCT > NC_000913/3664354‑3664830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |