| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,358,859 | 0 | T | C | 96.4% | 65.4 / ‑6.2 | 29 | Y110C (TAT→TGT) | puuP | putrescine:H(+) symporter PuuP |
| Reads supporting (aligned to +/- strand): ref base T (0/1); major base C (12/15); minor base A (0/1); total (12/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
CCTTCTCCTTTATGCAGTCCCTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGATAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGACC > NC_000913/1358628‑1359097 | ccgtctcCTTTATGCAGTCCCTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGGACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCGTCAGATGCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCAGCAAAAAGAGACAATCCAGCATCGATGACCa < 2:196081/248‑1 (MQ=255) aTGCAGGCCCTGAACTCCCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCTCCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATa < 2:375602/250‑1 (MQ=255) gAACTACCAGGAAGATAAACACACCCATGATGGAGATTTGCACCAGGACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGTCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGc < 2:364205/251‑1 (MQ=255) gAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGGTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCg < 1:239339/251‑1 (MQ=255) gAAGATAAACACCACCAGGATGGAGATTTGCCCCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCg < 2:406540/251‑1 (MQ=255) aGATAAACCCCCCCATGATGGAGAGTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGTCGTGCGGGTTAAGCGAc < 2:107859/251‑1 (MQ=255) caccaTGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTGAAAATGGGGACGAAAGTTAACACCCAAACCCACGGCGGCAACTACGGGAAGAGGGAGGGGAGAAAGAATTTCGCCAACAAGACGTGAATCATAGGCAAAAAGGGACAATCCAACAGCGGAGAACAGCCAAACATAAAACAGAAGAGCGGGTAAATGGATTTTTgcgggg > 1:401236/1‑248 (MQ=255) atgatgGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGt < 1:175893/251‑1 (MQ=255) gatgGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGGTAAAATGGCGACGAAAGGTACCACCCACACCCCCGGCGGCACTTCCGGGGAGAGGGGGGGGAGATAGATTTTCGCCAACAAGACGTTAATCCTCGGCAAAAAGAGACAATCCCACAGCGATGACCAGCCGACCATAAATCCGGCGTGAGGGTTAATCGGCTTTTTCGCGTAGGtat > 1:62956/1‑251 (MQ=255) atgGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAAAGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCACAAAGAGACAAACCAACAGCGATGGCCCGCCGCACATAAATCCGACGTGCGGGGTAAACTGCATTTTCGCGTAGGtatt > 1:163698/1‑250 (MQ=255) agaTTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACCCCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGGGCGGGt > 1:153309/1‑222 (MQ=255) agaTTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGt < 2:153309/222‑1 (MQ=255) gTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGCAGGTTACCACCCACACCCACGGCGGCAATTCCGGGAAGAGGGCGGGGAGATAGATTTTCGCCAACCAGACGGTAATCATCGGCAAAAAGAGACAATACAGCAGCGATGACCAGCCGCCCCTAAATCCGACGCGCGGGGTAATCGACTTTTGcgcgcagatcggcatggcccacgtctgc > 1:57400/1‑227 (MQ=255) gTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGGTACCACCCACACCCACGGCGGCACTTCCGGGGAGAGGGGGGAGAGATAGATTTTTGCCAAAAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCCACGAGGACCAGCCCACCATAAATCCGACGGGCGGGGTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTcc > 1:464939/1‑251 (MQ=255) gTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAAGGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGCCGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTGAATCGACTTTTGCGCGt < 2:57400/228‑1 (MQ=255) aGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCg < 1:393565/222‑1 (MQ=255) aCGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGc < 2:75988/251‑1 (MQ=255) gTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCcgcc > 1:362625/1‑249 (MQ=255) ttAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCcgccagc > 2:397710/1‑251 (MQ=255) aggtccccaccgccccccccggcggCCCTTCCGGGAGGGGGGCGGAGAGATAGATTTTCACCAACAGGACGTAAATCATCGGAAAAAAGAGACAATCCAGCAGCGATGCCCAGCCGCCCATAAACCCGCCGTGCGGTTTAACCGACTTTGGCGCGTAGGTATAGGCCGACCCGGCCTCCGAAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAACCAGCACACCCGCCAGCGCCAGCAAATAGGAc < 1:75452/232‑1 (MQ=255) ggTTCCCACCCCCCCCCCCGGCGGCATTTCCGGGAAGAGGGCGGAGAGATAGATTTCCGCCAACAAGACGTTAATCATCGGAAAAAAGAGACAACCCAGCAGCGATGACCAGCCGACCATAAACCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGACCCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACg < 1:397710/251‑1 (MQ=255) ccccccccccccctcggcggCCCTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACTTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGAGGACCAGCCGCCCATAAATCCGACGTGCGGGTTAATCGACTTTGGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAACCGGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCgg < 1:337294/237‑1 (MQ=255) ggcACGTCCGGGAAGAGGGCGGAGAGATAGCTTTTCGCCAAAAAGACGTTAATAATCGGCAAAAAGAGACAATCCAGCAGCGAAGACCAGCCGACCATAAATCCGAGGTGCGGGTTAATCGACTTTTGCGCGAAGGTATGGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGATTGTAGTAGATGATAGAGGTAAACGGCACACCCGCCAGAGCCAGCAAGTAGAACGCCGGGACGTGACAGTCGCAAAt > 2:357037/1‑251 (MQ=255) agatagatTTTCGCCAACAAGACGTTAATCACCGGCAAAAAGAGATAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCTTAGGTAAAGGCAGAACCGGCCTCCGGAAACTGGCGACCCAGTTTGCCGGAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATc < 1:75726/251‑1 (MQ=255) tagatTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCCGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCAGGAGACAATACCAAAAGTATCaa > 1:106537/1‑250 (MQ=255) aagagttcagCCAACAAGACGTTAATCTCCGGCAAAAAGAGACAACACAGCAGAGATGACCAGCCGACAAAAAACCCGGCGTTGGGGGTAACCGACTTTTGCGCGTGGGTATATTCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTAATAGCGGAAAACACCACCTCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCaaa < 1:29942/242‑1 (MQ=255) aaacacgtaaatatcgggCAAAAAGAGAAAAACCGGAAGAGATGCCCAGCCGACCATAAACCCGGCGTGGGGGTTAATCGACTTTGGCGCGTGGGTATAGGCCAACCCGGCCTCGGGAACCTGGCGACCCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACCCCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCg < 2:349967/235‑1 (MQ=255) catcGGCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGACCGTGACCGTCGCTAATGCCGGAGACCATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGccc > 2:215334/1‑250 (MQ=255) ggCAAAAAGAGACAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGAcc > 1:226941/1‑251 (MQ=255) | CCTTCTCCTTTATGCAGTCCCTGAACTACCAGGAAGATAAACACCACCATGATGGAGATTTGCACCAGTACAAACAGGGTATTGAAGTTAGCGACCAGGTTGACGCTCTTCAGATTCGCGGCGGTTAAAATGGCGACGAAGGTTACCACCCACACCCACGGCGGCACTTCCGGGAAGAGGGCGGAGAGATAGATTTTCGCCAACAAGACGTTAATCATCGGCAAAAAGAGATAATCCAGCAGCGATGACCAGCCGACCATAAATCCGACGTGCGGGTTAATCGACTTTTGCGCGTAGGTATAGGCCGAACCGGCCTCCGGAAACTGGCGAACCAGTTTGCCGTAGCTGATAGCGGTAAACAGCACACCCGCCAGCGCCAGCAAATAGGACGCCGGAACGTGACCGTCGCTAATGCCGGAGACAATACCAAAAGTATCAAATACGGTCATCGGCGTGAGATAGGCCAGACC > NC_000913/1358628‑1359097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |