| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,253,002 | C→T | intergenic (+17/+83) | dhaR → / ← ycgV | DNA‑binding transcriptional dual regulator DhaR/putative autotransporter adhesin YcgV |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,253,002 | 0 | C | T | 93.1% | 75.1 / ‑3.2 | 30 | intergenic (+17/+83) | dhaR/ycgV | DNA‑binding transcriptional dual regulator DhaR/putative autotransporter adhesin YcgV |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (14/13); total (15/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 | |||||||||||
GTTTACCGAGCAGGCGACAGATGATGTCAGCGCCACCCGCCTTTCCACCAGTCTGTCATTTGCGGAAGTTGAAAAAGAGGCAATTATTAACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCCGTTATTCCAGCCATTAC > NC_000913/1252769‑1253221 | gTTTACCGAGGAGGCGACAGATGATGTCAGCGCCACCCGACTTTCCACCAGTCTGTCATTTGCGGAAGGTGAAAAAGAGGCAAGTATTAACGCAGCCCAGGTCACAGGCGGACGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTGTTGATACATCAGAGTGAt < 1:38504/251‑1 (MQ=255) tttccGAGCAGGCGACAGATGATGTCAGCGCCACCCGCCTTTCCACCAGTCTGTCATTTGCGGAAGTTGAAAAATAGGCAATTATTAACGCAGCCCAGGTCACAGGCGGGCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCATCAAGGCATTGATTCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATc < 1:69388/247‑1 (MQ=255) cAGGCGACAGATGATGTCAGCGCCACCCGCCTTTCCACCAGTCTGTCATTTGCGGAAGTTGAAAAAGAGGCAATTATTAACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACAAGGCATTGATGCAAGGCAGGTTAAACGCCGGGGATGAAAGACAGAAACGATTTTTTATACATCAGAGTGATCTGTATTTc > 1:18731/1‑250 (MQ=255) gcCACCCGCCTTTCCACCAGTCTGTCATTTGCGGAAGTTGAAAAAGAGGCAATTATTAACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGGAAATGAAGCAAAATGGCCTTGATGCCGGGCAGTTTAAGCGCCGGGGATGAAAAAACGAAACGATTTTTGATACATCCAAGGGATCTGTATTTCATTCCGGCGCACGCTAACactt > 1:27338/1‑248 (MQ=255) ttCCACCAGTCTGTCATTTGCGGAAGTTGAAAAAGAGGCAATTATTAACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCg < 1:308216/250‑1 (MQ=255) ttCCACCAGTCTGTCATTTGCGGAAGTTGAAAAAGAGGCAATTATTAACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCg < 1:481788/250‑1 (MQ=255) cATTTGCGGAAGTTGAAAAAGAGGCAATTATTAACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGGAAATGAAGCAACATGGCCTTGATGCAGGGCAGTTTAAACGCCGGGGATGGAAGACAGAAACGATTTTTTATACATTCGAGTGGTCTGTATTTCATTCCGGCGCCCGCTAACAATTTTCAGAATCGTTTTAGGGCTTTTCt > 1:361989/1‑251 (MQ=255) tattaACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTTGGATCGGCCGCACTACGCTGTGGCGGAAAAATAAGCAACATGGCATTGATGCAGGGCAGTTTAAACGCCGGGGATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCAt > 1:431355/1‑206 (MQ=255) tattaACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCAt < 2:431355/206‑1 (MQ=255) attaACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTTATGCAGGGCCGTTTAAGCGCCGGGGATGAAAGACAGAAACGATTTCTGATACATCAGAGGGATCTGGATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTTAAAGCTGAAGCGATAtc > 1:8313/1‑251 (MQ=255) ccAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCagag < 1:86339/151‑1 (MQ=255) aGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAAAAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGAATGAAACACAAAAACGATTTTTGATAAATCAAAGTGATCTGTATTTCATTACGGCGCACGCTAACACTTTTCAGCATCGCTTACGGGATTGACTATCCCGAAATTCAAAGATGAAGCGATATCCTCCGTTGACTTGCTTCTg > 1:64558/1‑250 (MQ=255) aGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCAATACGCTGTAGCGGAAAATGAAGCCACATGGCATTGATGCAGGGCAGTTTAAACGCCGGGTATGAAAAACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGGGCACGCTAACAATTTTCAGCATCGTTTTAGGGCTTGTCTTTCCCACACTTAAACACTGAAGCAATATCCTCCGTTTGCTTGCTTCTg > 2:267113/1‑250 (MQ=255) cATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAgg > 1:250804/1‑251 (MQ=255) cAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGGTTAAGCGCCGGGTATGCACGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCCCGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAACGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGCTCCAAGAGGTTAc > 2:173693/1‑251 (MQ=255) ggAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTAccc < 2:27338/251‑1 (MQ=255) aaTGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGATACCCTGc > 1:349360/1‑251 (MQ=255) ggCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTa > 2:481488/1‑250 (MQ=255) tgggcgcGGCCGCACGAAGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCTGGTATGAAAGACAGAAACGATGTGTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAAGAATTTGCATCATCGTGTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGTCTTGCTGCTGATCAAAGATGTTTCCCTGCGTGTAATCCGCTTc < 2:395939/244‑1 (MQ=255) ggggAGCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACAGGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACTATTATTGATACATCAGAGTGATCTGTAGTTCAGTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCGTCTGATCAAAGAGGTTACCCTTCGTTTAATCCGCTTc < 2:202970/249‑1 (MQ=255) aTCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTAATCCGCTGCGAGAt < 2:388955/251‑1 (MQ=255) ggCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGAt > 1:227839/1‑248 (MQ=255) aCGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTGCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCt < 1:453950/251‑1 (MQ=255) gCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGATAGAATTTGTGCTGTTTGTTATACTGTGCACTg < 2:8313/251‑1 (MQ=255) cATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTATCAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGTTTACCCGGCGTGTAATCCGCt < 2:437981/208‑1 (MQ=255) cATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTAATCCGCt > 1:437981/1‑208 (MQ=255) caaggaaGTTTAAGCGAAGGGTATGATAGGCAGATACGACTTTTGATACATCAGAGCGATCTGTATTGTATGCCGGCGCACGCTAACACTTTTCAGAATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATAACCTCCGTTGAATTTCTTCTGATCAAACAGGTTAACCTGCGGGTATTCGGCTTCGGCGTAGAATGTGAGCTGTTTGTTATACTGCTCACTGAATCCCAAGCCTTTAtt > 2:90451/7‑251 (MQ=255) aaGCGCCGGGTATGAAAGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCCGTTATTCCAGCCATTAc < 1:481488/251‑1 (MQ=255) aGACAGAAACGATTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCCCGCTAACAATTTTCAGCATCGTGTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTg > 1:249447/1‑137 (MQ=255) aGACAGAAACGAGTTTTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTGTCAGCAGCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACGTGCTTCTg < 2:249447/137‑1 (MQ=255) | GTTTACCGAGCAGGCGACAGATGATGTCAGCGCCACCCGCCTTTCCACCAGTCTGTCATTTGCGGAAGTTGAAAAAGAGGCAATTATTAACGCAGCCCAGGTCACAGGCGGTCGCATTCAGGAAATGTCGGCTTTACTTGGGATCGGCCGCACTACGCTGTGGCGGAAAATGAAGCAACATGGCATTGATGCAGGGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCGATATCCTCCGTTGACTTGCTTCTGATCAAAGAGGTTACCCTGCGTGTAATCCGCTTCGAGATAGAATGTGTGCTGTTTGTTATACTGTGCACTGACTCCCACGCCGTTATTCCAGCCATTAC > NC_000913/1252769‑1253221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |