| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,193,141 | G→A | G211G (GGC→GGT) | mnmA ← | tRNA‑specific 2‑thiouridylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,193,141 | 0 | G | A | 97.3% | 110.5 / ‑4.3 | 37 | G211G (GGC→GGT) | mnmA | tRNA‑specific 2‑thiouridylase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (16/20); total (16/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.08e-01 | |||||||||||
TGCAACTGCTGGGCAATCAACCCGACAGACATCAGCCGCGGGTGTTCATGGCCCTGAGCGACAACCAGAATGTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGGCCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCGGCCC > NC_000913/1192896‑1193379 | ccccgacgctcttccgaacgcccGACAGACATCAGCCGCGGGTGTTCATGGCCCTGATCGACAACCAGAATTTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAg < 2:398678/231‑1 (MQ=255) aCCCGACAGACATCAGCCGCGGGTGTTCATGGCCCTGAGCGACAACCAGAATGTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGCCGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTaagt > 1:453062/1‑248 (MQ=255) cccGACAGACATCAGCCGCGGGTGTTCATGGCCCTGAGCGACAACCAGAATGTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAg > 1:398678/1‑231 (MQ=255) caTCAGCCGCGGGTGTTCATGGCCCTACACGACAACCAGAATGCTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGCGTTTACGTTCGCCAATg > 1:191593/1‑250 (MQ=255) cgcgGGTGTTCATGGCCCTTAGCGACAACCAGAATGTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTAACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGGGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAGGCAAAt > 2:204081/1‑251 (MQ=255) cgGGTGTTCATGGCCCTGAGCGACAACCAGAATGTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAACTGc > 2:466825/1‑251 (MQ=255) gtgtTCATGGCCCTGAGCGACAACCAGAATGTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCgg < 1:227999/251‑1 (MQ=255) ggCCCTGAGCGACAACCAGAATGTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGTCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACGAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGGCCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTc < 1:8335/250‑1 (MQ=255) tgttgtTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCttt > 2:463559/1‑232 (MQ=255) tgttgtTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCttt < 1:463559/232‑1 (MQ=255) tttCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAg < 2:400900/250‑1 (MQ=255) atgcGACCTCTTTGTACACCACATACCAGGGTTCTTCGGTACTTTCTTTGGTGCCAACGATACCCAGACCTTTACGCTGCCCGAGAGTGTGTTACATCAGCACCTGGTGCACACCAATTTCATCGACATCGACGGTAATGATTTTGCCCGGTTGCGCCGTGCTATAACGACCCAGGCACTCGCGGAGTTTACGTTCACCACTGAAGCAAATGCCGGTAGCGTCTTTTttattctaggtcagcagaaac > 2:417674/4‑233 (MQ=255) ttGTCCACCACAAACCACGGTTCTTCGGTACCTTCTTGGGTGCCACCGATACCCCGACCTTTTCGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCAGCGCCAACGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTGTGCTTCGCGGTGACCAGACCAAGATCTTCAGc < 2:143238/248‑1 (MQ=255) gTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTc < 1:116551/251‑1 (MQ=255) cttcttTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCCCCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTc > 1:466696/1‑139 (MQ=255) cttcttTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCAGCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTc < 2:466696/139‑1 (MQ=255) tttgTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCg < 2:9083/247‑1 (MQ=255) ttGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGAc < 1:385842/248‑1 (MQ=255) ccACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAg < 1:305422/251‑1 (MQ=255) tACCCAGGCCTTTACGCTGACCGAGAGTGTGAAACATCAGCCCCTTGTGCTCCCCAATGTCATCGCCATCGACGGTAAGGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAGTGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGGTTTTCCAGTTCGCCGACCGGTAACAGGCTTTg < 2:22284/250‑1 (MQ=255) aCCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCAGCGACGGTAATGATTTTGCCCGGTGGCGCCGGGAGATAACGACCCAGGAACTCTCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTTCGGTTTTTCCAGTTCGCCTACCGGGAACAGGCTTTgc < 1:204081/250‑1 (MQ=255) aCGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCAt < 1:218957/251‑1 (MQ=255) gCTGACCGAGAGTGTGATTCATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTGGCGCCGGGAGATAACGACCCAGGAACTCGCGGAAGTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTGCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATgg < 2:135695/251‑1 (MQ=255) gACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTg > 1:276393/1‑251 (MQ=255) cctggagTGGGATACATCAGCTCCCGGTGCTCACCAATTTCATCGCCATCGAAGGGAATGATTTTGCCCGGTTTCGCCGGGAGATATCGACCCAGGAACTCGCGGAATTGACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTGACGCACCTGCGGTTTTTCCAGGTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAg < 2:251784/247‑1 (MQ=255) tACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGa > 1:377337/1‑250 (MQ=255) ccATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTGCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAAGCTGCTCATGGCTGAGCGTATAAAGGaa < 1:348884/249‑1 (MQ=255) aCATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGAAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCCATCTGCTCATGGCTGAGCGTATAAAGGa > 1:377331/1‑249 (MQ=255) acccTGGTGCTCACCAATTTCCTCGCCATCGACGGTACTGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGAAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGCCCGGGACCAGGCTTTGCGCAATCTGCTCACTGCTGAGAGTCAAAAGGAAGTAGctct > 2:324225/2‑251 (MQ=255) cTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCAGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGCAGTAGCTCTGGt > 1:304619/1‑251 (MQ=255) tttCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTcc > 2:180436/1‑251 (MQ=255) aTTTTGCCCGGTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGGTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCtt < 2:304619/251‑1 (MQ=255) gTTGCGCCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACa < 1:439665/251‑1 (MQ=255) cgcCGGGAGATACCGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCgg > 1:398729/1‑251 (MQ=255) cgcCGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCgg > 1:177685/1‑251 (MQ=255) ccGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCGGcc < 1:180436/251‑1 (MQ=255) cGGGAGATAACGACCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCGGccc < 1:205172/251‑1 (MQ=255) | TGCAACTGCTGGGCAATCAACCCGACAGACATCAGCCGCGGGTGTTCATGGCCCTGAGCGACAACCAGAATGTTGTTTTCGACGTCTTTGTCCACCACATACCACGGTTCTTCGGTACCTTCTTTGGTGCCACCGATACCCAGACCTTTACGCTGACCGAGAGTGTGATACATCAGCCCCTGGTGCTCACCAATTTCATCGCCATCGACGGTAATGATTTTGCCCGGTTGCGCCGGGAGATAACGGCCCAGGAACTCGCGGAATTTACGTTCGCCAATGAAGCAAATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCATCGACATCGGCCC > NC_000913/1192896‑1193379 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |