| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 154,182 | C→T | L415L (CTG→CTA) | htrE ← | putative fimbrial usher protein HtrE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 154,182 | 0 | C | T | 97.0% | 92.8 / ‑4.1 | 34 | L415L (CTG→CTA) | htrE | putative fimbrial usher protein HtrE |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (20/12); total (21/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.90e-01 | |||||||||||
ATGGATTTCGGTTCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTCAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAT > NC_000913/153940‑154419 | aTGGATTTCGGTTCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAg < 2:167550/251‑1 (MQ=255) aTTTCGGTTCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCt < 1:465786/251‑1 (MQ=255) cGGTTCTAGATCTTTTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTTTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTTGAATGAGTCCCATCGAAAGAAAATGCACCAACTGAAGTATTTAGCCCAAGACCTAAc < 2:16002/250‑1 (MQ=255) aCTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTATGTGTCGAATAGCGATAGGCCGCGATATTCAGTAAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCATGGTATGTTTTATCATCCGGGTTACGAACATGGGAATGAGTCACATCGAAAGAAAATACACCAACTGAAGTATTTAGACCATGCCCTAACAAAACATCGGAAAAGTTATTATCgttaat > 2:354150/1‑246 (MQ=255) cTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATc > 1:105245/1‑251 (MQ=255) tcatcaATTAGAGTTAGTGCATCATTAAGACCAAGGTACTTCTGAGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTg > 2:440531/1‑251 (MQ=255) tcatcaATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATc < 1:25448/249‑1 (MQ=255) tcaATTAGAGTTAGTGCATCATTCAGACCAAGGTAATTCTGAATCGAATAGCGATAGGCCGCGATCTTCAGTGAAGTACTTGTTTATTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGAGATACGAACATTGGAATGAGTCACCTCGACAGAAAATGCAACACATGAAGTATTTAGACCAAGACCTCACAACCCAGCGGTATAGTTATTATCGGTTATCTGAAt > 2:370768/1‑251 (MQ=255) gTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTGTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAAccc < 1:440531/251‑1 (MQ=255) aTTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCgt > 1:316745/1‑251 (MQ=255) ttCTGAGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCACCTGAAGTATTTAGACAAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCgtt > 2:157681/1‑250 (MQ=255) gtgtCGAATAGTGATAGGCCGCGATATTCAGTGAAGTTCTTGTTTCTTCTAATAACTTGGTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCAGCCGGGATTGGAACATTGGAACGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATTCCGGTATAATCCGTCAGATAGTTATTCAGGCCgtagt < 2:96998/249‑1 (MQ=255) gATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGcttgcttg > 1:178376/1‑250 (MQ=255) gCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGaaataa < 1:253857/251‑1 (MQ=255) cgcgATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGaaataaat > 1:307463/1‑251 (MQ=255) atatTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAgg < 2:170338/251‑1 (MQ=255) gTGAAGAACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGATATTATCGGTTATCTGAATACCGGTATAACCCGCAAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATcc > 2:346288/1‑251 (MQ=255) gTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATatcatt > 1:456545/1‑250 (MQ=255) gTTTCTTCGAATAAATTGTTCAAGGAAACACGATAACTTTGCCCATGGTATGTTTTATAATCCGGGATACGAACATTAGAATGAGACACATCGAAAGAAAATGCTCCAACTGAAGTATTTAGACTAAGACCTAACAAACAAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGACAGATAGTTATTCAGGCCGTGGTAGTAGCTTGCTTGAACTAAATTAGGCTAATCATGAatatactc > 2:190303/1‑247 (MQ=255) cGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTCTAACCCGTCAGATAGTTATTCTGGCCGTAGTAGTAGCTTGCTTGAAATAAATGAGGCTCATCCTGAATTTCATCTTTTa > 2:54509/1‑249 (MQ=255) gAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGACAGATAGTTATTCAGGCCGGAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATAACATCTTTTa > 2:301032/1‑248 (MQ=255) gATAACTTTGCCCCTGGTATGTTTTATCAGCCGGGATACGAACTTTGGAATGAGTCACATCTAAAGAAAATACACGAACTGAAGTCTTTAGAACAAGACCTAACAAACCAGCGGAATAGATATTATCGGTTATATGAATACCGGTATAACCAGTCAGATAGTTATTCATGCCGTAGTAGTAGCTAGCTTGAAATAATTTCGGCTCATCCTGAATATCATCTTTTAAGTCCTgccagccaaatatctacca > 2:96674/1‑232 (MQ=255) tGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAgg > 2:470044/1‑251 (MQ=255) aTGTTTTATCATCAGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTCAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATACTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGt > 2:175602/1‑251 (MQ=255) tATCATCCGAGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGACACTAATATCCCAACGTCCAACGCCAGGGCGTAACAtt > 2:396763/1‑251 (MQ=255) atcatcCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCCGCGGCATAGTTCTTATAGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGATTGCTTGAAATAAATTAGGCTCATCCTGAACATCATCTTTTAAGACATGACCGCAGCTAATATCCCAACGTCCAAAGCCAGTGCGTacaattt > 1:33837/1‑245 (MQ=255) atcatcCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACAttt > 1:368787/1‑251 (MQ=255) gggATACAAACATTGGAATGAGCCACTAAAAAAAAAAATCCCCCAACTGAATTTTTTAGACAAAGCCCTAAAAACCCAGGGTTATAGTTATTACCGTTTATCTAAATACCGGTATAACCCTTCAGATATTTATTCGGGCCGTAGTAGTAGCTTGTTTAAAAAAAATTAGGCTCATCCTAAATATCATCTTTAAAGCCCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGaacaac < 1:153340/251‑1 (MQ=255) aTACGAACATTGGAATGAGTCACATCGAAAAAAAATGCACCAACTGAAGTATTTAGACCAAGACCAAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGTTATAACCCGTCAAATAGTTATTCAGGCCGTAGTAGGAGCTTGCTTAAAATAAATTAGGCTCATCCTGAATATCATTTTTAAAGCCCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGa < 1:78657/251‑1 (MQ=255) aaggagtcacaaaaaaagaaaATGCACAAACTGAATTATTAAGAAAAAGACCTAAAAAACCAGCGGTATAGTAATTATCGTTAACCACAATACGGGTAAAACCTGAAAGATTGTAATTATGTCAGTAGTAGTAGTTTCTTTAAAAAAAATTAGCCACATCCTGAAAAACATCTTAAAAGCCCTTCCCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGc < 2:290191/237‑1 (MQ=255) aggAGTCACATCAAAAAAAAATGCACAACCATAATTTTTTAGCCCAAGCCCTAACAAACCAGCGGTATAGTTATTATGGGTTATCTAAATCCCGGTATAACCCGTCAAATATTTATTCAGGCCGTATTATTAGTTTTCTTAAAATAAATTAGCCTCATCCTAAATATCATCTTTAAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCg < 1:348743/249‑1 (MQ=255) cAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAt > 2:392174/1‑251 (MQ=255) tGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGAc < 1:260436/155‑1 (MQ=255) tGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGAc > 2:260436/1‑155 (MQ=255) | ATGGATTTCGGTTCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTCAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCATCGGAT > NC_000913/153940‑154419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |