| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 16,981 | G→A | noncoding (30/59 nt) | sokC → | small regulatory RNA antitoxin SokC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 16,981 | 0 | G | A | 91.7% | 54.3 / ‑3.2 | 25 | noncoding (30/59 nt) | sokC | small regulatory RNA antitoxin SokC |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (10/12); total (12/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
CGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGAGGCCTCGGGTTG‑ATG‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAT > NC_000913/16740‑17177 | cgccgATGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGGTTCAAGTGAAGATCAGGGCGGAAATCATCGCCTTATGCCGCTTCCTTGCTCTCTTCTCCTTTACCTTTCGTGCCGTAAAAGGCACTCC‑ACATTTTTTCCGCATTTAGGGGGCCTCGGGGTG‑ATA‑ATAAAata > 2:449098/1‑250 (MQ=255) cgTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACCAATGACGATCAAGGCGACAATCATCGCCCTATGCTTCTTCATTGCCCTCTTCTCCCTGACCTTTCCGTCAGTAAGCGGCACTCC‑ACATGTGTTCAGCCTATAGGGGGCCTCGGGTTG‑ATGAGTAAA‑TATCAc > 1:459687/1‑251 (MQ=255) gTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGGCGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCCGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGGTG‑ATA‑GTAAAATATCAcc > 2:11312/1‑250 (MQ=255) ttgcaattACTCGGATTCGTAAGCCGTGAAATCAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAACGCCGCCACTACGGCGGTGATGAAGATGAAGGTCAGGGCGACACTCATCGCCTCATGCTGCTTAATTGCTCTCTTCTCCTTGCCCTTACGGTCCCTAAAAGGCACTCT‑ACCTGTGTTCGACATATAGGGGGCCTCGGGTTG‑TTA‑GTAAAAAATCACTc > 1:471609/7‑251 (MQ=255) ttcagctTACTTGGACTCTTAAGCCGTAAAAACAGCAACCTCCGGCGGGCCAGTTCGGAGGTGAACCTCACAGAGGTCTTTTCTCGTTCCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCAc < 1:466798/244‑1 (MQ=255) tGCTCTTATCCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGGACCTCACAGAGGTCTTTTCTCGTTCCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGAGGCCTCGGGTTG‑ATG‑GTAAAATATCACTc < 1:124858/250‑1 (MQ=255) ccgacgctctccagattcgCCGAGAAAACAGCAACCCCCGTCGGCCCAGTGCGGATGTGAACCCCACAGAGGTTTTTTCTCTTTCCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCgggg < 2:39072/233‑1 (MQ=255) ccGGATTCGTAAGCCGTAAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTtc < 1:65341/250‑1 (MQ=255) cGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGGTACAGATGACGATCAGGGCGACAATCATCTCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCCTACGGTCAGTAAAAGGCCCTCT‑ACCTGTGTTCAGCATTTAGGGGGCCCCGGGTTG‑GTC‑GTAAAATATCACTCGGGGCtttttt > 2:239557/1‑249 (MQ=255) cGGAGTCGTAAGCCGGGAAACCAGCACCCGCCGTCTGGCCAGTTCGGATGTGATCTTCACAGGGGTCTTGTCCCGTGACCAGCGCCGCCACTACGGCTGTGATACAGAGGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCGTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTtct < 1:442177/251‑1 (MQ=255) aGCCGTAAAAACAGCACCCTCGGTCTGGCCATTGCGGGTTGGAACCTCACAGAGTTCTTTCCTCGTACCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCG‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCg < 1:448148/251‑1 (MQ=255) gCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCCTATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCggggggatcggaagagcacacc > 1:39072/1‑233 (MQ=255) accagcagCCTCCGTCGGGCCAGTTCGTATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTaa < 1:58093/249‑1 (MQ=255) gtgAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGCTCAGGGCGACAATCATCGCCTTTTGCTGCTTCCTTGCTCTCTTCTCCTTGACCTTACGGTCCGTAAGAGGCACTCT‑ACCTGTGTTCAGCATTTAGGGGGCCTCGGGGTG‑GTA‑GTAAAATATCACTCGGGGCTTTTTTCTATCTGCCGTTCAGCTAATGCCTTCGACAGATAGACTCAAGCACccgc > 2:381066/1‑251 (MQ=255) gggAACCCCACAGAGGTCTTTTCTCGTTACCGTCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACccg < 1:82526/248‑1 (MQ=255) aCGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTTCCGTTCAGCTAAAGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGAtt > 1:369855/1‑251 (MQ=255) ggggCGACAACCTCCGCTTTATGCTTCTTCTTTCCTCTCTTCCCCTTGCCTTTACGGTCAGAAAGAGCCCCTCT‑ACATGTGTACAGAATAGAGGGGGCCGGGGTTTG‑ATA‑AAAAAATACCCCCGGGGGTTTTTCTTTATCTCCCGTTCAGCTAATGCCTGAGACAAATACCCACAACCCCCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCAtt < 1:381066/250‑1 (MQ=255) ggCGACAATCATCGCCTTATGCTGCTTCCTTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCAtttt > 1:91166/1‑251 (MQ=255) ccTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAAtttt > 1:411026/1‑251 (MQ=255) tgctgcTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAAt > 1:152647/1‑251 (MQ=255) ccccttttccccTTGACTTTACGGTAAGTAAG‑GGCCCTTTTACATGTTTTCAGCATATGGGGGGCCTGGGGTTG‑ATA‑AAAAAATACCACTCGGGTTTTTTCTTTATCTGCCGTTCAGCTAATGCCTGAGACAGATACCCTAAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAattat < 1:239557/240‑1 (MQ=255) ccttgccctgccgggcagaaaGAGCCACTCT‑AAATGTGTTCAGCATATGGGGGGCCTCGGTTTG‑ATA‑GAAAAATCTCCCTGGGGGTTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACATATCGCCACAAGCCCCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAAt < 1:11312/232‑1 (MQ=255) gtcctgacgggaaGTAAGAGGCACTCT‑ACTTGTTTTCAGATTATGGGGGGCCTCGGTTTG‑TTA‑GTAAAATATCCCTCGGGGTTTTTCTCTATCTCCCGTTCATCTAATCCCGGAAACAGATTGCCCCAAGCTCCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTAt < 1:229718/239‑1 (MQ=255) gtggtcataaaGAGCCACTCT‑ACATGTTTTCAGCGTATGGGGGCCCTCGG‑TTGTAGA‑GTAAAATATCCCTGGGGTTTTTTTTCTATCTGCCTGTCAGCTAATGTCGGAGACAGATCGCCTCAAACACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCttt < 1:109444/242‑2 (MQ=255) ggTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCCTTCTGTTTTATCGCTTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCtttat > 2:201977/1‑248 (MQ=255) | CGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAGCATATAGGAGGCCTCGGGTTG‑ATG‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAT > NC_000913/16740‑17177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |