| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 16,966 | A→G | noncoding (15/59 nt) | sokC → | small regulatory RNA antitoxin SokC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 16,966 | 0 | A | G | 96.4% | 76.1 / ‑5.3 | 28 | noncoding (15/59 nt) | sokC | small regulatory RNA antitoxin SokC |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (15/12); total (15/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
ATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGAGGCCTCGGGTTG‑ATG‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAT > NC_000913/16726‑17177 | aTGGGATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATTACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGt > 1:179370/1‑251 (MQ=255) gATCACTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATTACGATCCAGGCGACAATCAACGCCTTATGCTTCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAATAAGAGGCACTCT‑CCATGTGTTCAGACA‑ATAGGGGGCCCCGGGGTG‑At > 1:99925/1‑251 (MQ=255) aCTCCCCGCCGTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATAAAGATGAAGATCAGGGGGGAAATCAACGCCTTATGCTGCTTCAATGCTTTCTTCTCCTTGACCCTACGGTCCGTAAGAGGCACTCT‑AAATGTGTTCAG‑CAAATAGGGGGCCCAGGGTTG‑Atagt > 1:323244/1‑247 (MQ=255) cgccgATGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGGTTCAAGTGAAGATCAGGGCGGAAATCATCGCCTTATGCCGCTTCCTTGCTCTCTTCTCCTTTACCTTTCGTGCCGTAAAAGGCACTCC‑ACATTTTTTCCG‑CATTTAGGGGGCCTCGGGGTG‑ATA‑ATAAAata > 2:449098/1‑250 (MQ=255) cgTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACCAATGACGATCAAGGCGACAATCATCGCCCTATGCTTCTTCATTGCCCTCTTCTCCCTGACCTTTCCGTCAGTAAGCGGCACTCC‑ACATGTGTTCAG‑CCTATAGGGGGCCTCGGGTTG‑ATGAGTAAA‑TATCAc > 1:459687/1‑251 (MQ=255) gTTGCACTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGGCGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCCGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGGTG‑ATA‑GTAAAATATCAcc > 2:11312/1‑250 (MQ=255) ttgcaattACTCGGATTCGTAAGCCGTGAAATCAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAACGCCGCCACTACGGCGGTGATGAAGATGAAGGTCAGGGCGACACTCATCGCCTCATGCTGCTTAATTGCTCTCTTCTCCTTGCCCTTACGGTCCCTAAAAGGCACTCT‑ACCTGTGTTCGA‑CATATAGGGGGCCTCGGGTTG‑TTA‑GTAAAAAATCACTc > 1:471609/7‑251 (MQ=255) ttcagctTACTTGGACTCTTAAGCCGTAAAAACAGCAACCTCCGGCGGGCCAGTTCGGAGGTGAACCTCACAGAGGTCTTTTCTCGTTCCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCAc < 1:466798/244‑1 (MQ=255) tGCTCTTATCCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGGACCTCACAGAGGTCTTTTCTCGTTCCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGAGGCCTCGGGTTG‑ATG‑GTAAAATATCACTc < 1:124858/250‑1 (MQ=255) ccgacgctctccagattcgCCGAGAAAACAGCAACCCCCGTCGGCCCAGTGCGGATGTGAACCCCACAGAGGTTTTTTCTCTTTCCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCgggg < 2:39072/233‑1 (MQ=255) ccGGATTCGTAAGCCGTAAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTtc < 1:65341/250‑1 (MQ=255) cGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGGTACAGATGACGATCAGGGCGACAATCATCTCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCCTACGGTCAGTAAAAGGCCCTCT‑ACCTGTGTTCAG‑CATTTAGGGGGCCCCGGGTTG‑GTC‑GTAAAATATCACTCGGGGCtttttt > 2:239557/1‑249 (MQ=255) cGGAGTCGTAAGCCGGGAAACCAGCACCCGCCGTCTGGCCAGTTCGGATGTGATCTTCACAGGGGTCTTGTCCCGTGACCAGCGCCGCCACTACGGCTGTGATACAGAGGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCGTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTtct < 1:442177/251‑1 (MQ=255) aGCCGTAAAAACAGCACCCTCGGTCTGGCCATTGCGGGTTGGAACCTCACAGAGTTCTTTCCTCGTACCCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCG‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCg < 1:448148/251‑1 (MQ=255) gCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CCTATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCggggggatcggaagagcacacc > 1:39072/1‑233 (MQ=255) accagcagCCTCCGTCGGGCCAGTTCGTATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTaa < 1:58093/249‑1 (MQ=255) gtgAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGCTCAGGGCGACAATCATCGCCTTTTGCTGCTTCCTTGCTCTCTTCTCCTTGACCTTACGGTCCGTAAGAGGCACTCT‑ACCTGTGTTCAG‑CATTTAGGGGGCCTCGGGGTG‑GTA‑GTAAAATATCACTCGGGGCTTTTTTCTATCTGCCGTTCAGCTAATGCCTTCGACAGATAGACTCAAGCACccgc > 2:381066/1‑251 (MQ=255) gggAACCCCACAGAGGTCTTTTCTCGTTACCGTCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACccg < 1:82526/248‑1 (MQ=255) aCGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTTCCGTTCAGCTAAAGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGAtt > 1:369855/1‑251 (MQ=255) ggggCGACAACCTCCGCTTTATGCTTCTTCTTTCCTCTCTTCCCCTTGCCTTTACGGTCAGAAAGAGCCCCTCT‑ACATGTGTACAG‑AATAGAGGGGGCCGGGGTTTG‑ATA‑AAAAAATACCCCCGGGGGTTTTTCTTTATCTCCCGTTCAGCTAATGCCTGAGACAAATACCCACAACCCCCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCAtt < 1:381066/250‑1 (MQ=255) ggCGACAATCATCGCCTTATGCTGCTTCCTTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCAtttt > 1:91166/1‑251 (MQ=255) ccTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAAtttt > 1:411026/1‑251 (MQ=255) tgctgcTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAAt > 1:152647/1‑251 (MQ=255) ccccttttccccTTGACTTTACGGTAAGTAAG‑GGCCCTTTTACATGTTTTCAG‑CATATGGGGGGCCTGGGGTTG‑ATA‑AAAAAATACCACTCGGGTTTTTTCTTTATCTGCCGTTCAGCTAATGCCTGAGACAGATACCCTAAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAattat < 1:239557/240‑1 (MQ=255) ccttgccctgccgggcagaaaGAGCCACTCT‑AAATGTGTTCAG‑CATATGGGGGGCCTCGGTTTG‑ATA‑GAAAAATCTCCCTGGGGGTTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACATATCGCCACAAGCCCCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAAt < 1:11312/232‑1 (MQ=255) gtcctgacgggaaGTAAGAGGCACTCT‑ACTTGTTTTCAG‑ATTATGGGGGGCCTCGGTTTG‑TTA‑GTAAAATATCCCTCGGGGTTTTTCTCTATCTCCCGTTCATCTAATCCCGGAAACAGATTGCCCCAAGCTCCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTAt < 1:229718/239‑1 (MQ=255) gtggtcataaaGAGCCACTCT‑ACATGTTTTCAG‑CGTATGGGGGCCCTCGG‑TTGTAGA‑GTAAAATATCCCTGGGGTTTTTTTTCTATCTGCCTGTCAGCTAATGTCGGAGACAGATCGCCTCAAACACCCGCCGCTATTATATCGCTCTCTTTAACCCATTCTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCttt < 1:109444/242‑2 (MQ=255) ggTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGGGGCCTCGGGTTG‑ATA‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCCTTCTGTTTTATCGCTTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCtttat > 2:201977/1‑248 (MQ=255) | ATGGGATCACTCCCCGCCGTTGCTCTTACTCGGATTCGTAAGCCGTGAAAACAGCAACCTCCGTCTGGCCAGTTCGGATGTGAACCTCACAGAGGTCTTTTCTCGTTACCAGCGCCGCCACTACGGCGGTGATACAGATGACGATCAGGGCGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCT‑ACATGTGTTCAG‑CATATAGGAGGCCTCGGGTTG‑ATG‑GTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAT > NC_000913/16726‑17177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |