| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,131,341 | Δ128 bp | IS5‑mediated | yghQ ← | putative transport protein YghQ |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3130355–3131342 | 3131468 | 127–1114 | 6 [5] | [1] 40 | [insH9]–[yghQ] | [insH9],[yghQ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 39 (0.850) | 33/476 | 0.4 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3131469 = | 0 (0.000) | coding (940/1068 nt) | yghQ | putative transport protein YghQ | |||||
GTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTC > NC_000913/2288688‑2289155 | gTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACACTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCATAAACCAGCTGGGTATCTTTTTTCCGGACAAAACCCACCACTGTCTCACCATACTCCACAATTGGAGCCCATGCTTTGGGTG‑GATATaagggaggggggaaaaaacggg > 2:336284/1‑237 (MQ=255) cATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTTAACAGTTGTTGCCAATGCTATGGGTGGAAT‑TAAGGAAGGTGCGAATAAGAgggg > 1:321032/1‑250 (MQ=255) tGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAAACAGCTGGGTATCTTTTTTCAAGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATTATATGGGTG‑AATATAAGGAAGGTGCGGATAAGCGGGGAAAttcttcac > 1:410796/1‑249 (MQ=255) gcgcCATTCATTTCAATGTACTGATCCCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtc < 1:162493/251‑1 (MQ=255) ttCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTTCTTACACCAAATTCTGTTAGATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTGTGTCCAGGACAACACCATCAACTGTCTCACCATCCTCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc < 1:447797/250‑1 (MQ=255) ttaaTGTCCTGATACCCTCCGTTAATTACAGTATTATTGCTTACCCCTAATTCTTTTATATGCTGTTCTTCGCCAGGATTTATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACGCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGTAAGGTGCTAATAAGCGGGGAAATTCTTCTCGGCTGTCTCAGTCATTTCATttct < 2:448613/248‑1 (MQ=255) aaTTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCTCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc < 1:161823/251‑1 (MQ=255) gTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAAACCCATAAACTGTCTCACCATCATCAACAATTGATGACCATGCTATAGGTG‑ACTCTAAGGAAGGTGCGACTTAGGGGGGAAATTCTTCTCGGCTGCATCAGTCATTTACTTTCTTTATGTTTGAGCCGATTTTTTCTCCCGtca > 1:442566/1‑248 (MQ=255) tattaCTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATTCTCAACAGTTGATGCCTATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCgg < 1:195579/179‑1 (MQ=255) cTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCCGGATATCTTTTTTCCGGACAAAACCATCAACTGTCTCACCATACTCCACCGTTGATGCCAATGCTATGGGTG‑AATATAAGGGAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCCTTTCTTCTTGGTTTAGCCGATTTTTTCTCCCCTAAATGCCTTGAATCAGCCTATTTTGACCGTttctt > 1:145384/1‑251 (MQ=25) gCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTCCCGGACAACACCATCAACTGTCTCACCATACTCCACAGTTGATGCCCATGCTATGGGTG‑AATCTAAGGAAGGTGCGACTAAGCgggggaa > 1:314533/1‑144 (MQ=255) gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGAGGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGaaa < 2:314533/147‑1 (MQ=255) aGGATTGATTTTCGTATTATTGGCGGTCCCATCAACCAACTGGATATCTTTTTTCACGACCACACCCACAACTGTTTCCCCCTACTCAACAGTTGATGCCACTGCTATGGGTG‑AATATAAAGAAGGTGCGAATAAGCGGGGGAAATCTTTCCGGCCGGCTCAGTCATTTTATTTCTTTATTTTTGGGCCCGTTTTTTTTCCCGTCAATGCCTTTAATCACCCTATTTAGCCCGGTTCTTCGCCATTTAAgg > 2:399801/1‑251 (MQ=255) attgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGGTATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTTATGCCAATGCTATGGGGG‑AATATAAGGAAGGGGCGAATAAACGGGGGAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTTTTCGCCCTTTAAGGCGt > 1:404375/1‑251 (MQ=25) attTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACGCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTTTTCGCCATTTAAGGCGTTAt < 1:431213/250‑1 (MQ=255) tttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTTCAGGACCACAACATCAACTGTCTCACCATACTCAAAAGTTGATGCCAATGCTATGGGGG‑GATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATTCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTAAGGGGTTATccc > 1:314305/1‑251 (MQ=21) attattGGCGGTCCCCTAAACCAGCTGGATATCTTTTTCCAGGACAAAACCATCAACTGTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGATTTTTTCTCCCGTAAATGCCTTTAATCAGCCTATTTTGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGttt > 1:136512/1‑251 (MQ=21) tCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCAtt > 1:132428/1‑251 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGtt < 1:196579/251‑1 (MQ=255) aCCATACTCAACAGTTGATGCCAATGCTATGGGTT‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGaa < 1:235171/251‑1 (MQ=255) aTACTCAACAGTTGATGCCAATTCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATaa < 1:336284/251‑1 (MQ=255) aaTGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTga < 2:113196/173‑1 (MQ=40) aaTGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTga > 1:113196/1‑173 (MQ=40) aTGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTAATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGATCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTc > 1:300062/1‑251 (MQ=21) | GTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTG‑AATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTC > NC_000913/2288688‑2289155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |