| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,586,576 | IS5 (–) +4 bp | intergenic (‑90/+241) | ydeP ← / ← ydeQ | putative oxidoreductase YdeP/putative fimbrial adhesin protein YdeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1396044 = | NA (NA) | 29 (0.630) | 28/478 | 0.6 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1586576 = | 0 (0.000) | intergenic (‑90/+244) | ydeP/ydeQ | putative oxidoreductase YdeP/putative fimbrial adhesin protein YdeQ | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 36 (0.790) | 31/476 | 0.4 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1586579 | 0 (0.000) | intergenic (‑93/+241) | ydeP/ydeQ | putative oxidoreductase YdeP/putative fimbrial adhesin protein YdeQ | |||||
TGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTAT > NC_000913/1396998‑1397477 | ggCTGAAAAACGATGACCAACGGGCGATTTTATTCACTCTGGCCAACCGGTTTCGGGCGGACCAATTGTTC‑CGTCAGCGGGAGAG‑ATCTCACTAAAAACTGGTGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGTCATTTATGGGAGAAAAATTCGGCTCAAACAAGAAGAAATCAAATGACTGAGTCAGCCTAGAAAAATTTCCCCGCTTATTCGCACCTTCCCTACCTAAt < 2:247117/249‑1 (MQ=11) gATAACCAACTGGCGATGTTATTCACGATGGCCAACCTGTTTCGGGTGGACCCCATGATA‑CGTCAGTGGGAGCG‑ATCTCACTAATAACTGGGGATAACGACTTAAATGGCGAAGAAACGGTCTAAATAGGATGATTCAAGGCATGTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGACTAGCAGACTTTCCCCGTTTATTCACACCTTCACTAACTACTCAATGCGTGGAt > 2:470199/1‑251 (MQ=11) aaCCAACTGACGATGTTATTTACGCTGGCCAACCTGTTGCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAAGGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAATAAATGAAAGGACTGAGTCAGCCGAGAAGAATTTCCCCTCTTATTCGCCCCTTCCCTAACTAATCAATGCGTTGATTg < 2:25498/250‑1 (MQ=11) aaCTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAACACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCACTGCGTTGTTTGTAAAt > 2:407601/1‑251 (MQ=255) tGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATcc > 1:376458/1‑250 (MQ=255) gTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTa > 1:232261/1‑248 (MQ=255) gTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAag < 2:376458/250‑1 (MQ=255) gttgtcccGCTGGACAACCTGTTTCGGGAGGGCCAAATGGTAACG‑CAG‑GGGGGAGGAACCCACTAAAAACCGGGGAAAACGCCTTAAATGGCGAAGAAACGGTCGAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAAGCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGTCGAGAAGAATTTCCCCGCTTATTCGCACCGTCCCTAACTAATCAATTCGTTGATTGTAAATCCAGCTAagag < 2:447122/244‑1 (MQ=14) tATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAagag < 1:251757/250‑1 (MQ=255) aCGCTGGCCAACCTGTTTCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCGAACTAATCAATGCGTTGATTGTAAATCCAGCTAAgaggtgagg < 2:280303/251‑1 (MQ=255) caaccggattCGGTCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAACCGGTCTAAAGAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCaga < 1:454143/243‑1 (MQ=255) ggCGGACCACATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGCTAACGCCTTAAATGGCGAAGAAACGGACTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGATCAAACATGAAGAAATGAAATGACTGCGTCAGCCGAGACGAATTTCCCCGCTTATTCGAACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCCGACAACggg > 2:318467/1‑250 (MQ=17) aCCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATTAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAAt < 1:363344/251‑1 (MQ=255) aCCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTACTCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGATGAAAt > 2:238987/1‑251 (MQ=255) aaaTGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCGAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTc < 1:431194/251‑1 (MQ=255) aaTGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGTGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACAGGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCa < 1:102960/251‑1 (MQ=255) aaTGATA‑CGTCAGTGGGAGAG‑AGCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCCTTTAAGGGAGAAAAAATGGGCTCAAACATGAAAAAATGAAATGACTGAGTCAGCAGAAAAGGATTTCACCGCTTATACGCAACTTCACTAACTAATCAATGCGTTGATTGTAAATCAAGCTAAGCGTTGAGGTTTTCACAGCAGACAACTGTGAAATGTc > 2:89440/1‑250 (MQ=17) aTA‑CGTCAGTGGGAGAG‑ATCGCACTAAAAACGGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAACGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGt < 1:435460/251‑1 (MQ=255) a‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTa < 2:5926/250‑1 (MQ=255) cGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGCGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAgg > 1:248034/1‑251 (MQ=255) cGCCTTAAATGGCGAAGAAACGGGCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATTACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCTCCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCATCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGTTAACAAGAAATTTGTCTGCACAAgg < 1:286091/251‑1 (MQ=255) ccTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGAt > 1:158637/1‑251 (MQ=255) aaTGGCGAAGAAACGGTCTCAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAACTGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCag > 2:208659/1‑178 (MQ=255) aaTGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCag < 1:208659/178‑1 (MQ=255) gCGAAGAAACGGTCTAAAGAGGCTGATGCAAGGCATTTACGGGAGAAAAAATCGGCTTAAACATGAAGAAAGGAAATGACGGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACGAATCAAGGCGTTGATTGTAAATCCAGCTAAGAGGTTAGGTTTTCAGAGCAGACAACGGTGAAATGTTATTGTATTGTTACGTGTAGGTAACAAGAAAGTTGTCTGCACAAGGATTACATCATg < 2:213746/251‑1 (MQ=21) aaaTAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTg < 1:252130/251‑1 (MQ=255) aGGCTGATTCAAGGCATATACGGGAGAAAAAATCGGCTCACACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCACTGCGTTGATTGTCAATc > 1:240388/1‑132 (MQ=14) aGGCTGATTCAAGGCAGTGACGGGAGAAAAAATCGGCTCAAACAGGAAGAAATGAAATGACTGAGTCATCCGAGAAGAATATCCCCGCTTATTCGCACCTTCCCTAACTAAACAATGCGTTGATTGTAAATc < 2:240388/132‑1 (MQ=255) ggCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTc > 2:98692/1‑251 (MQ=255) cGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAAttt < 1:89440/251‑1 (MQ=255) agaaATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCatt < 1:205693/251‑1 (MQ=255) atgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAATCTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTg < 1:319250/251‑1 (MQ=255) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGAGTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAAc < 1:369423/113‑1 (MQ=255) tgaaatgaCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGGTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAAc > 2:369423/1‑113 (MQ=255) agaaTTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGCTGAGGTTTTCAGAGCAGACAACGGTGAGATGTCAGGGTATTGTTACGTTTAGGTAACTAGAAATTTGTCTGCACAAGGATTACATCATGATTATTGCGAAACTGAAGTCAGCGAAAGGGAAGCAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGCCGTCGGTTGTGAccccggcgc > 1:271246/1‑243 (MQ=255) tCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTtat < 2:232261/250‑1 (MQ=255) | TGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATA‑CGTCAGTGGGAGAG‑ATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTAT > NC_000913/1396998‑1397477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |