| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,936,855 | 0 | T | G | 72.2% | 52.9 / 12.6 | 36 | A424A (GCT→GCG) | fucI | L‑fucose isomerase |
| Reads supporting (aligned to +/- strand): ref base T (4/6); new base G (16/10); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.66e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTGGCAATGCTAATGGGTCACCAGCTCACCGGCACCGCTCAGGTATTTGCCGATGTGCGTACCTACTGGTCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCTGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATCGCGGAAGGCTGGAGCGTGGAATTGCCGAAGGATGTGCATGACATCCTCAACAAACGCACCAACTCAACCTGGCCAACCACCTGG > NC_000913/2936612‑2937092 | cGTGGCAATGTTAATGGGTCACCAGCTCACCGGCACCGCGCATGTATTTGCCGATGTGCGTACCTACGGGTCACCAGAAGCAATTGCGCGTGTAACGGGGCATAAACTGGATTGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGTTTCTGCTGCGCTGGACGGTACCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTTGGAAATCTCTCAGCAAGAGGCGGACGCtt < 2:57026/251‑1 (MQ=255)cGTGGCAATGCTAATGGGTCACCAGCCCACCGGCACCGCTCAGGTATTTGCCGATGTGCGTACCTACTGGTCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCTGACGCtt < 2:76915/251‑1 (MQ=255) ggCAATGCTAATGGGTCACCAGCTCACCGGCACCGCTCAGGTATTTGCCGATGTGCGTACCTACTGGTCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGcc > 1:49500/1‑251 (MQ=255) cAATGCTAATGGGTCACCAGCTCACCGGCACCGCTCAGGTATTTGCCGATGTGCGTACCTACTGGTCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGTCGGACGCTTGCCTc < 1:72191/251‑1 (MQ=255) aaTGCTAATGGGTCAACAGCTCACCGGCACCGCTCAGGTATTTGCCGATGTGCGGACCTACTGATCACCCGCAGCAATTGAGCGTGTAACGGGGCATAAACTGGCTGGACTGGCAGAACACGGAATCCTCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGGTCCTGTAAACAACGCGACAGCGCAGGGAACCCGACGATGAAGCCCCACTGGGAACACACTCAGCAAGAGGCGGACGCTTGCCTcg > 2:105256/1‑251 (MQ=255) tCACCGGCACCGCTCAGGTATTTGCCGATGTGCGTACCTACTGGTCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCg > 1:148025/1‑251 (MQ=255) ccgccaaGGTATTTGCGGATGGGCGTCCCTACGGGTCACAAGAAGCAATTGAGGTTGTACCGGGGAATAAACGGGATGGACGGCCAGACCACGGCATCATCCATTTGACCAACTCGGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGAAAGAGGCTGCCGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCAc < 2:81168/245‑1 (MQ=255) ggTATTTGCCGATGTGCGTACCTACTGGTCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCACGCGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACt > 2:123439/1‑251 (MQ=255) atctgccgagtggCGTTCCTTCTGGTCACCAGAATCAATTGAGCGTGTAACGGGGCATAAACGGTATGGACTGGCAGAACACGGCCTCACCCATTTGATCAACTCCTGTTCTGCTTCGCTGGACGTTCCCTGTAAACAACGCGACATCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATTCCTCAGCAAGAGGCGGACGCTTTCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTc < 1:290899/238‑1 (MQ=255) ttGCCGATGTGCGTACCTACTGGTCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGTTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGCAGGTAACCCGACGATGAGGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTACACGGCGATCCACGAATGCTTccat > 1:18948/1‑249 (MQ=255) ggTACCTACTGGTCACCAGAAGAAATGGAGCGTGTGAGGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAAAAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTa < 1:8851/250‑1 (MQ=255) tCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACCTTTCCCGCtt > 2:217598/1‑251 (MQ=255) cAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGACGGTAACCCGACGATGAAGCCACCCTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCCCTTCCTTACCGa > 1:267638/1‑250 (MQ=255) atggagcgattAACGGGTCATAAACTGGATGGACTGGCAGAACACGGCATCACCCTTTTGATCAACTCCGTTTCTGCTGCGCTGGTCGGTTCCTGTAAACAACGCGCCCGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCTGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTGCGTGGCGTCGGTTACTCTTCCCGCTTCCTTACCGAAgg < 1:85149/241‑1 (MQ=255) gAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGCAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGCAggcgg > 1:118934/1‑251 (MQ=255) aTAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGTGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTAATCTTCCCGCTTCCTTACCGCAGGCGGCGTCCCGTTCACCATg > 1:187880/1‑251 (MQ=255) tggatggaCTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGGCCCGTTCCCCATGAATCgt > 1:287627/1‑251 (MQ=255) aTTTGATCAAGTCCGGTTCTGCTGCGCTGGACGGTGCCTGTAAACAACGCGACAGCGAATGTAACCAGACGATGAAGCCACACTGGGAAATCTTTCAGAAAGAGGCGGACGCTGGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTa < 1:50656/251‑1 (MQ=255) gaccAACTCCGGTGCTGCCGCGGTGGACGGTTCCGGAAACCAACGAGACCGTGAAGTCACCCCTACGATGAAGCCTCACTGGGAAACCTCGCAGCATGAGGCGGAACTTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTGCCGTGGCGGCTGTTACTCTCCCCGCTTCCTTACCGAAGGCGGCTTCCCGGTCACCATGACTCGTGGCAACATCATCAAAGGCCTGGG‑ACCGGTACTGc < 2:76720/248‑1 (MQ=255) gATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATAATCAAAGGCCTGGG‑ACCGGTACTGc > 1:232439/1‑251 (MQ=255) aTCAACCCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCa < 1:217598/251‑1 (MQ=255) aCTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCTGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATTAACCGTGTCAAAATCATTCAAGGACTGGG‑ACCGGTACTGCAAATc > 1:228603/1‑251 (MQ=255) ccgggTTCTGATGCGCGGGACGGTTCATGTAAACAACGCGACAGCGAAGGAAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATcgc < 1:225183/248‑1 (MQ=255) ccGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCTGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGGTCCTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGGGTCACCATCATCCAAGGGCTGGG‑ACCGGTACTGCAAAAcgcg > 2:1877/1‑251 (MQ=255) ctgcGCTGGACGGTTCCTGTAAACAACGCGCCAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCCCGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAAGCGGCGTCCCGGTAACCATGGCTCGTGTCCACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATCGCGGGAGCCTgg > 2:191990/1‑251 (MQ=255) gcTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGGACTGCAAATCGCGGAAGGCTGGAGCg > 1:6139/1‑251 (MQ=255) ggTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATCGCGGAAGGCTGGAGCGTGGAAtt > 1:268244/1‑251 (MQ=255) tactgaaaaCAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCTGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGTGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATCGCGGAAGGCTGGAGCGTGGAATTGc < 1:139002/244‑1 (MQ=255) ccttaaaaCACCGCGACAGCGAAGGAACCCCGACGAGGAAGCCACACTGGGAAACCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATCTCGGAAGGCTGGAGCGTGGAATTGcc < 1:89822/245‑1 (MQ=255) gcgcacgagagggaaaCCCGACTATGAGGCGACACGGGGAAATCTCCCATCAAGAGGCGGACGCTTGCTTCGCCGCTACCGAATGGTGCCCGGCGATTCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTGCCTGACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACTGGTACTGCAAATCGCGGAAGTCTGGAGCGTGGAATTGCCGAAGGATGTGCAt < 2:112786/237‑1 (MQ=255) aaCCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCTGACGCTTGCCTCGCCGATACCGAATGGTGCACGGCGATCAACGAATACTTCCGTGGCGGCGGATACCTTTCCCGCTTAATTACCGGCGGCGGGGTCACGTTCCCCATGACTCGGGTCAACATACTCAAATGCCTGGG‑GCCGGGACTGCAAATACCGGCAGGCTGGAGCGTGGGATTGCCGAAGGATGTGCCTGACAACCTcaaca > 1:125893/1‑250 (MQ=255) ccgacgtggacgCCACACGGGGAAATCTCTCGGAAAGGGGCTGACGCGGGCCTCGCCGCTGCCGAAGGGGGCCCGGCGATCCACGAATACTTCCGGGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGGCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATCGCGGAAGGCTGGAGCGTGGAATTGCCGAAGGATGTGCATGACATCCTCAACAAACg < 2:253921/240‑1 (MQ=255) ccGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCTGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACCTCATCAAAGGCCTGGG‑ACCGGTACTACAAATCGCGGAAGGCTGGAGCGTGGAATTGCCGAAGGATGTGCATGACATCCTCAACAAACg > 1:43652/1‑251 (MQ=255) aTGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCGGACGCTTGCCTCGCCGCTACCGCATGGTGCCCGGCGATCCACGCATACTTCCGTGGCGGCGGGTACTCTTCCCGCTTCCTTACCGAAGGCTGCGTCCCGTTTCCCATGAATCGTGTCAACATCATCAAAAGCCTGGGGCCCGGCACTG‑AAATCCCGGAATGCTGGAGCGGGGGATTGCCGAAGGATGTGCATggactcctcaaacaacgcccca > 2:261265/1‑229 (MQ=255) gAAGCCACACGGGGAAATCTCTCAGCAAGAGGCTGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATCGCGGAAGGCTGGAGCGTGGAATTGCCGAAGGATGTGCATGACATCCTCAACAAACGCACCAAc < 1:1877/250‑1 (MQ=255) ctcAGCAAGAGGCTGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCCTCAAAGGCCTGGG‑ACCGGTACTGCAAATCGCGGGAGGCTGGAGCGTGGAATTGCCGAAGGCTGTGCATGACATCCTCAACAAACGCACCAACTCAACCTGGCCAaccccccgg > 2:152134/1‑245 (MQ=255) | CGTGGCAATGCTAATGGGTCACCAGCTCACCGGCACCGCTCAGGTATTTGCCGATGTGCGTACCTACTGGTCACCAGAAGCAATTGAGCGTGTAACGGGGCATAAACTGGATGGACTGGCAGAACACGGCATCATCCATTTGATCAACTCCGGTTCTGCTGCGCTGGACGGTTCCTGTAAACAACGCGACAGCGAAGGTAACCCGACGATGAAGCCACACTGGGAAATCTCTCAGCAAGAGGCTGACGCTTGCCTCGCCGCTACCGAATGGTGCCCGGCGATCCACGAATACTTCCGTGGCGGCGGTTACTCTTCCCGCTTCCTTACCGAAGGCGGCGTCCCGTTCACCATGACTCGTGTCAACATCATCAAAGGCCTGGG‑ACCGGTACTGCAAATCGCGGAAGGCTGGAGCGTGGAATTGCCGAAGGATGTGCATGACATCCTCAACAAACGCACCAACTCAACCTGGCCAACCACCTGG > NC_000913/2936612‑2937092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |