New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4436762 =	25 (0.980)	4 (0.160)	4/486	2.4	13.8%	coding (8/741 nt)	cysQ	3'(2'),5'‑bisphosphate nucleotidase
	?	NC_000913	= 4499511	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region
Rejected: Frequency below/above cutoff threshold.

GCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTCATCCACTGAAAAAT  >  NC_000913/4499266‑4499751                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  gCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACTGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCtt                                                                                                                                                                                                                                               <  1:153226/250‑1 (MQ=14)          ggAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGatat                                                                                                                                                                                                                                     >  1:254805/1‑251 (MQ=35)             gagTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGaa                                                                                                                                                                                                                                  <  1:283049/251‑1 (MQ=37)                       aTAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATAtt                                                                                                                                                                                                                        <  1:227361/251‑1 (MQ=255)                                                      gTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACt                                                                                                                                                                                        <  1:230095/251‑1 (MQ=255)                                                                                           aaCGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAg                                                                                                                                                   <  1:114315/251‑1 (MQ=255)                                                                                             aggtagcaAAGAACCTTTCGTGGGAGTTCGAGCATTATAACGAATTGCATCCGCATAGTGCGCTGGGTTATCGCTCGTCACTGGAATAGCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGga                                                                                                                                                 <  2:249640/247‑1 (MQ=21)                                                                                                  gcaAAGAACCTTGCAGAGGCGTTCGAGAATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCACGCCACGGGAATATCTGCGTCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAAt                                                                                                                                            >  1:122164/1‑251 (MQ=255)                                                                                                     aaGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑Ag                                                                                                                                                                                             <  2:171023/199‑1 (MQ=255)                                                                                                     aaGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑Ag                                                                                                                                                                                             >  1:171023/1‑199 (MQ=255)                                                                                                        aaCCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACATTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGAATTACCGTATGCCATATATGATTACCTGTGATCAGGAAGAATAAGTgg                                                                                                                                      >  2:148048/1‑251 (MQ=255)                                                                                                                                                                        cgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGgttagtta                                                                      <  1:249003/251‑1 (MQ=255)                                                                                                                                                                                        gCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGAGCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCg                                                      <  1:292272/251‑1 (MQ=255)                                                                                                                                                                                          gtcAGCGGGCTTGTAAGTGTTTAAGTGATAACTGATGTCTGGAGATAGTGGGGCAAATCCACCGTGTTCTGATATGAATACGGATATTTCATACAGAATACTTTTCAGT‑CATAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGATGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAACCCATAACAGGTTAGTTTTCTTCCGCTGTCATCGGa                                                    <  2:122164/249‑1 (MQ=255)                                                                                                                                                                                                              ttAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGAt                                                                                                                                                                >  1:143797/1‑123 (MQ=255)                                                                                                                                                                                                              ttAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGAt                                                                                                                                                                <  2:143797/123‑1 (MQ=255)                                                                                                                                                                                                                aaGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTc                                >  1:23936/1‑249 (MQ=255)                                                                                                                                                                                                                        aCAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAg                                                                              >  1:35049/1‑195 (MQ=255)                                                                                                                                                                                                                        aCAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTg                                                            >  1:109530/1‑213 (MQ=255)                                                                                                                                                                                                                        aCAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTg                                                            <  2:109530/213‑1 (MQ=255)                                                                                                                                                                                                                        aCAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGGGATCAGGAAGAATAAGTGGCTGAGTTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAg                                                                              <  2:35049/195‑1 (MQ=255)                                                                                                                                                                                                                          aGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCCTAACAGGTTAGTTATCt                                                                   >  2:228613/1‑204 (MQ=255)                                                                                                                                                                                                                          aGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCt                                                                   <  1:228613/204‑1 (MQ=255)                                                                                                                                                                                                                                  ggAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGAGCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTAGCGTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTCATcc            <  1:280638/251‑1 (MQ=255)                                                                                                                                                                                                                                            gtgcaaataaaCCTTGTGCTGATATGAATACGGCTATTTTATACAGAATACTTTTAAGTACA‑AGCGACTGTATTAAAGTCTGCCATATATACTTACCTGTGATCAGGAAGAATAAGTGGCTGAGGGTTCAAACTGTCTGCAGGTATATTCCTCTCTCCCTTTAAAACCATAACAGGTTAGTTATCTTCTACTGTAAGCGGATTGAATGGCGGTATATTTTTAGAAAAAATACCAGTCATCCACTGAAAAAt  >  2:221697/11‑251 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                  GCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACA‑AGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTCATCCACTGAAAAAT  >  NC_000913/4499266‑4499751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.