Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,123,617 IS2 (–) +5 bp coding (836‑840/1026 nt) cytR ← DNA‑binding transcriptional repressor CytR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4123617 =5 (0.200)24 (0.940) 22/486 0.2 82.5% coding (840/1026 nt) cytR DNA‑binding transcriptional repressor CytR
?NC_000913 4498181 = NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? NC_000913 = 41236215 (0.200)26 (1.020) 26/486 0.1 83.6% coding (836/1026 nt) cytR DNA‑binding transcriptional repressor CytR
?NC_000913 = 4499511 NA (NA)noncoding (1331/1331 nt) IS2 repeat region

AAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAA‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCT  >  NC_000913/4497931‑4498416
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           
aaatcaggaaTCACCCCTGGCAAATTCCCGGGAATTAGTCTAGGATTAGTTTTTTTGGTAAAAAAGACAAACGGTATTAA‑CTGATTGATTTACTATTTACCGCTACCCGCAGGGTTGATTATCAGAAACCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTATCCGCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGGGCTGCAGGGATTTGATGTTCCTTTGt                                                                                                                                                                                                                                             <  2:56691/243‑1 (MQ=255)
                  ggCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAA‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAAtc                                                                                                                                                                                                                           <  1:221769/251‑1 (MQ=255)
                      aaTGCCCGGGGATTATTCTCGGAGTATTTTCTGTGTTAAAAAAGACACACGGTATTAC‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATCCATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATACGGGATAACTGACGTAAGGAGTGCTGCCGGGATTTTATGGTCCCTTGTATACTCTCCCCATGAATCTcc                                                                                                                                                                                                                        >  2:57498/1‑250 (MQ=255)
                                 attatgCTATGATTATTTTCTTTGTTAAAAAAGCCAAACGGTATTAA‑CTGATGTTTTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAata                                                                                                                                                                                                            <  2:81962/251‑1 (MQ=255)
                                      tCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAA‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACt                                                                                                                                                                                                       >  1:295295/1‑251 (MQ=255)
                                              tattTTCTTTGTTAAAAAAGACAAACGGTATTAA‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATa                                                                                                                                                                                                 >  2:131753/1‑249 (MQ=255)
                                                 tttCTTTTTTAAAAAATACAATCGTTATTAAACT‑ATGTATTTACTATTTTCCGTTCTCTGCAGGTTGGTTTATCAGAATCCGCGATTATTCACTATTTATATACATTCAATAAAAAAGTCACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGTTCCCTTGTAAACTGGCCCTCTGAATCTCCAGACATCCAATATCACTTAAATAAGtc                                                                                                                                                                                             <  2:87807/250‑2 (MQ=255)
                                                         ttAAAAAAGACAAACGGTATTAA‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGGAACCTCATAAAAAATCCTGTACTCACAGGGAGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACAAATATCACTTAAATAAGTGCTAGTCtt                                                                                                                                                                                     >  1:118751/1‑250 (MQ=255)
                                                           aaaaaaGACAAACGGTATTAA‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCAGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                                                                                                                                                                   <  1:13982/250‑1 (MQ=255)
                                                                       cGGTATTAA‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCAGTATTTATATTCATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCATACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAg                                                                                                                                                                      <  2:285081/251‑1 (MQ=255)
                                                                                       tatttactatttacCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                                                                                                                                                                   <  2:111615/239‑1 (MQ=255)
                                                                                       tatttactatttacCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                                                                                                                                                                   >  1:111615/1‑239 (MQ=255)
                                                                                       tatttactacttacCGCTCCCTGCAGGGGGGCTTATCAGAATCCGCGGTTATTCATTATTTATATAAATTCAGTAAAAAAGTAACCTCATAAAAAATCCTGTACTAACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCACCCTGAATATCCAGACAACCAATATCACTTAAATAAGGGATAGTCTTAATACTAGTTTTTAGACTAGTCATTgg                                                                                                                                                          >  2:68752/1‑248 (MQ=38)
                                                                                                  tacCGCTCCCTGCAGGGTGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt                                                                                                                                             <  1:210499/250‑1 (MQ=255)
                                                                                                                                 ccGCGGTTATTCATTATTTATATACATTCCATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACAAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTACACTAGTCATTGGGTCAAAGATGATTGATTTCTTAAGTCCGGAGAAAAGCAGACgacg                                                                                                             >  2:116227/1‑248 (MQ=37)
                                                                                                                                               tatttatATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTATGGCCGGAGAAACGCAGACGGCGTACCACACAGGaa                                                                                                >  1:75232/1‑250 (MQ=255)
                                                                                                                                                  ttatATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGaaa                                                                                               >  1:5125/1‑248 (MQ=255)
                                                                                                                                                             cAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGCAAAGATCGCAATTGtt                                                                                 >  1:228486/1‑251 (MQ=255)
                                                                                                                                                                        tAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCtt                                                                      >  1:69686/1‑251 (MQ=255)
                                                                                                                                                                                            tACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCACTATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGtct                                                  >  1:132925/1‑251 (MQ=255)
                                                                                                                                                                                                                          tAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTagc                      >  1:229439/1‑249 (MQ=255)
                                                                                                                                                                                                                                            tttGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTctct  >  1:8831/1‑251 (MQ=35)
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           
AAAACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAA‑CTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCT  >  NC_000913/4497931‑4498416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.