New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2102943	NA (NA)	4 (0.160)	4/486	2.4	16.7%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	2115039 =	20 (0.780)					coding (858/1395 nt)	wcaM	putative colanic acid biosynthesis protein WcaM
Rejected: Frequency below/above cutoff threshold.

TTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTCAACATGTATCAACTGCCGACAATCCGATCCCGTGATATTCGCCACGACAAAGTTTTTCACTGCCTGGTCTTCCGGGTAGTTGTTATCATAAGTGCTTCCCGCAAGGCCTATGCCGATGCCCCAGTTGATTTTGCCGTTGGTACAGTTGATGCGCTCGATGACATG  >  NC_000913/2114794‑2115269                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                       gtaggtagCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCAGACGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCAAAACAGAAAAAAGCGACTGTCGAGTTATCAATGCCCGCTTTATTACt                                                                                                                                                                                                                                   >  2:211299/6‑251 (MQ=255)        gcgcCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATcc                                                                                                                                                                                                                            <  1:139567/251‑1 (MQ=255)              taaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgacttcactgtcggcgaaggtaagttgctgactcatgatgaaccctgttctatggctccagatgaccaacatgatctcatatccgggacttgttcgcaccttccCTTACTGAAATCCGTCGTg                                                                                                                                                                                                                      >  2:245493‑M2/233‑251 (MQ=255)                                    ggAGATTTGAATGCCGCGCAATTTATAAGCAAGCAGCGTATGATCCAGTTGAATAGCATTCACCCGGAAATTTTGCGGAAACAAGCAATATTAGCCTTTAATTACCCCAAAACCGCATAACATCCCGGCGCTATTACTCATTTCAATATTAACAATCACGCAATTGTCACAACAGTAAATAGCGACTGTCGAGATATCCATGACCGCTATCTTCCTTAAATACGGCGTGCTATGGCGCACTTTGATATTAc                                                                                                                                                                                                >  2:120937/1‑251 (MQ=255)                                     gagaTTTGAATGCCGCGCAATTTATAAGCAAGATGAGTAGTATCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAAGTACCCCATAGCCGATTAACATACCGGCGCTATTAAACATTTCAATATTATCAATCACGAAAGTGTCACAACCGTAAATAGCGACTGTCGCGTTAGCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATGGCGGGCTTTGATATTACg                                                                                                                                                                                               <  2:25841/251‑1 (MQ=255)                                      agaTTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCCGGCTCTATTAATCATGTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATTCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGa                                                                                                                                                                                              <  2:195505/251‑1 (MQ=255)                                                     gcAATTTATAAGCAAGATGAGTATTATCCAGTTGAATATCATTCACCCTGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATTCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTa                                                                                                                                                                               <  2:205169/251‑1 (MQ=255)                                                      cgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGttt                                                                                                                                                                                <  1:245493‑M2/57‑1 (MQ=255)                                                          ttATAAGCAAGATGAGTATTAACCAGTTGAATATCATTCACCCGGAAATGTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTTATATTGCGGGCTTTGATATTACGAATAACAAAAGGTTTACCAt                                                                                                                                                                           <  2:238177/250‑1 (MQ=255)                                                              aaGCAAGATGAGTATTATCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACAGCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTAGCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTc                                                                                                                                                                       <  1:273055/250‑1 (MQ=255)                                                                        aGTATTATCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTCAACATGTATc                                                                                                                                                             >  1:150408/1‑250 (MQ=255)                                                                           attatCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAACTTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTCACCATGTATCAACt                                                                                                                                                         >  1:36541/1‑251 (MQ=255)                                                                                                                                   cTTTAATTACCCCATAGCCGATTAACATCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTCAACATGTATCAACTGCCGACAATCCGATCCCGTGATATTCGCCACGACAAAGTTTTTCACTGCCTGGTCt                                                                                                 >  1:221487/1‑251 (MQ=255)                                                                                                                                                             aTCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCACTGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTCAACATGTATCAACTGCCGACTATCCGATCCCGTGATATTCGCCACGACAAAGTTTTTCACTGCCTGGTCTTCCGGGTCGTTGTTATCATAAGTGCt                                                                       >  2:92376/1‑251 (MQ=255)                                                                                                                                                                        aTTAATCAATTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTATCGCGTTATCAATGCCCTATTTCTTCCTGAAATCCGGCGTGATATTGCGGATTTTGATATTACGACTAACACAATGTATACCATTTTCAACAGGTATCAACTACCGACAATCCGATCCCGAGATAATAGCCACGACAAAGTTTATCACTGCCAGGTCTTCTGGGTGGTTGTTATCATAAGTGCTTccctctaagc                                                            >  2:52351/1‑244 (MQ=255)                                                                                                                                                                         ttAATCATTTCTATATTATAAAACACGAAATTGTCACAACCAGAAAAAGCGACTGTCGCGTTATCCATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGTGTTTGATATTACGAACAACATAATGTTTACCATTTTCAACATGTATCACATGCCGACAATCCGATCCAGTGATATTAGCCACGACAAAGTTTTTCACTATCTGGTCTTTCGGGTAGTGGTTATCATAAGTGCTTccgcaaaggcc                                                           >  2:124483/1‑242 (MQ=255)                                                                                                                                                                                atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTAc                                                                                                                                                                              >  2:217032‑M2/71‑129 (MQ=255)                                                                                                                                                                                atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTAc                                                                                                                                                                              <  1:217032‑M2/59‑1 (MQ=255)                                                                                                                                                                                    aaTATTATCAATCACGAAATTGTCTCATCCGTAAATTGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGATTTGATATTAGGAATAACAAAAGGTTTACCATTGTCAACATTTATCAACTGCCGACAATCCGATCCCGTGATATTCGCCACGACAAAGTTGTTCACTGCCTGGTCTTCCTGGTAGTTGTTATCATAAGTGCGTCCCGCAAGGCcgatgccgatgc                                                <  2:292028/251‑1 (MQ=255)                                                                                                                                                                                                              aaCCGTAAATAGCGACTGTCGCGTTCTCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTAcc                                                                                                                                                                             >  2:174989/1‑100 (MQ=255)                                                                                                                                                                                                              aaCCGTAAATAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTAcc                                                                                                                                                                             <  1:174989/100‑1 (MQ=255)                                                                                                                                                                                                                     aaTAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTCAACa                                                                                                                                                                   <  2:143166/103‑1 (MQ=255)                                                                                                                                                                                                                     aaTAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTCAACa                                                                                                                                                                   >  1:143166/1‑103 (MQ=255)                                                                                                                                                                                                                                  gcgTTATCAATGCCCGCTTTCTTACTGAAATCCGGCTTGATATTGCGGGCTTTGATATTACGAATAACAAAATTTTTCCCATTTTCAACATGTATCAACTGCCGACAATCCGATCCCGTGATATTCGCCACGACAAAGTTTTTCACTGCCTGGTCTTCCGGGTAGTTGTTATCATAAGTGCTTCCCGCAAGGCCTATGCCGATGCCCCAGTTGATTTTGCCTTTGGTACAGTTGATGCGCTCGATGACATg  <  1:55464/251‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                       TTAGTTAGCGCCACAAAGGAAACAGCATTCCCGGCGGAGATTTGAATGCCGCGCAATTTATAAGCAAGATGAGTATTATCCAGTTGAATATCATTCACCCGGAAATTTTGCGGTATCGAGAGATATTTGCCTTTAATTACCCCATAGCCGATTAACATCCCGGCGCTATTAATCATTTCAATATTATCAATCACGAAATTGTCACAACCGTAAATAGCGACTGTCGCGTTATCAATGCCCGCTTTCTTACTGAAATCCGGCGTGATATTGCGGGCTTTGATATTACGAATAACAAAATGTTTACCATTTTCAACATGTATCAACTGCCGACAATCCGATCCCGTGATATTCGCCACGACAAAGTTTTTCACTGCCTGGTCTTCCGGGTAGTTGTTATCATAAGTGCTTCCCGCAAGGCCTATGCCGATGCCCCAGTTGATTTTGCCGTTGGTACAGTTGATGCGCTCGATGACATG  >  NC_000913/2114794‑2115269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.